 coissac
|
bc82422bc5
|
Reduce redundante call to bytes.ToLower and substitute the last call by an home made version doing the conversion in place
Former-commit-id: d9ea22f649d97be352f8dbb37acc1495df830118
|
2023-03-28 11:43:04 +07:00 |
|
|
coissac
|
e8a8f746d3
|
few bug in the graph algorithm
Former-commit-id: b61bdd9f671e2f5e90d32c1beac1ed84efa5e05c
|
2023-03-27 22:43:45 +07:00 |
|
|
coissac
|
245230ae12
|
A small correction
Former-commit-id: 2616ea6bc0e288312326bfb2542e24da22876965
|
2023-03-27 19:51:38 +07:00 |
|
|
coissac
|
a33e471b39
|
First attempt for obiconsensus... The graph traversing algorithm is too simple
Former-commit-id: 0456e6c7fd55d6d0fcf9856c40386b976b912cba
|
2023-03-27 19:51:10 +07:00 |
|
|
coissac
|
d5e84ec676
|
rename goutils to obiutils
Former-commit-id: 2147f53db972bba571dfdae30c51b62d3e69cec5
|
2023-03-24 10:25:12 +07:00 |
|
|
coissac
|
42aae88520
|
complete the correction related to the tag detection
Former-commit-id: 98326fb0f27788de672cdbd686b32b4dc2615038
|
2023-03-23 11:52:08 +07:00 |
|
|
coissac
|
57474214e7
|
Patch excessive log in obimultiplex and an error in detecting the tag.
Former-commit-id: e6f427ac743cae373247a15bf49b0a27273b2569
|
2023-03-23 11:40:24 +07:00 |
|
|
coissac
|
98eac2360c
|
adds a rule to update packages and push the corresponding updates module files
Former-commit-id: 1ffa805e74571f9d970dcb185f187dd586c1a190
|
2023-03-21 22:02:18 +07:00 |
|
|
coissac
|
7ed567fbad
|
Make the --help or -h options working when mandatory options are declared
Former-commit-id: db502ff81dcf20449d126978fcebf890edb814ae
|
2023-03-21 22:01:20 +07:00 |
|
|
coissac
|
d09011fac2
|
Finalyse the obimultiplex with indels
Former-commit-id: cef0ac39dac0e02d16d4bd321966a0f8a67f2c85
|
2023-03-21 22:01:02 +07:00 |
|
|
coissac
|
27d6c60e25
|
Add the possibility to look for patterns allowing indels.
Former-commit-id: 0599c2b0ad16df086dbdb08e491503870d8904be
|
2023-03-20 15:28:24 +07:00 |
|
|
coissac
|
5fbe52368c
|
Patch the empty batch bug
Former-commit-id: fcee04b58f2c4a0bf2c27792f991391c0b6ce78e
|
2023-03-07 20:16:06 +07:00 |
|
|
coissac
|
1e7756ec91
|
Add comment on release notes
Former-commit-id: 79bc0a68e46c92cfac60d1cf25604a1bcba0ba34
|
2023-03-07 17:36:35 +07:00 |
|
|
coissac
|
9a48614a9b
|
Merge branch 'master' of git.metabarcoding.org:obitools/obitools4/obitools4
Former-commit-id: 45c52be778d3d5c61db438c18c38a85171be86cd
|
2023-03-07 17:34:34 +07:00 |
|
|
coissac
|
b3922c3896
|
Produce less weird crash on non existing files
Former-commit-id: 74bb27bd53c685be530632994bd2ba24c1f362e1
|
2023-03-07 17:34:25 +07:00 |
|
|
coissac
|
42cf8cea73
|
Update README.md
Former-commit-id: c2d9f79cceb8f059f65a417bea5041fc2abc362b
|
2023-03-07 05:50:19 +01:00 |
|
|
coissac
|
7b4249b775
|
Update README.md
Former-commit-id: 544600322dd3c4465bf02d99ea76c802529b9aed
|
2023-03-07 05:48:50 +01:00 |
|
|
coissac
|
fbfed52508
|
Tag realease 4.0.1 in release notes
Former-commit-id: 55d009baf1b975c2da397a93406d132c8a52cdd6
|
2023-03-07 11:15:06 +07:00 |
|
|
coissac
|
bb0282b6a1
|
Progress on the development
Former-commit-id: a8aa6fd60480d4453838d6846a08c84dd5a2f1d9
|
2023-03-07 11:13:25 +07:00 |
|
|
coissac
|
d4b185b716
|
Adds some new dependencies
Former-commit-id: 2f31ea6f852651e1ffca1d9ce78b17bddd26f2bb
|
2023-03-07 11:12:39 +07:00 |
|
|
coissac
|
d88de15cdc
|
Refactoring codes for removing buffer size options. An some other changes...
Former-commit-id: 10b57cc1a27446ade3c444217341e9651e89cdce
|
2023-03-07 11:12:13 +07:00 |
|
|
coissac
|
9811e440b8
|
Takes into account the option parsing errors
Former-commit-id: d0b3ed0b96a72f79f887df8fbc325427e63d7a73
|
2023-03-07 11:06:08 +07:00 |
|
|
coissac
|
6b52dc0700
|
Correct the Makefile for a default rule
Former-commit-id: 7ac32f3f9778842fecd65cdd796b81f61b7fa41f
|
2023-03-02 20:48:55 +07:00 |
|
|
coissac
|
b9bf88d4df
|
Adds some new columns to the ratio file.
Former-commit-id: 1b2d6116622b754670e86b683077aceac2db4ce7
|
2023-02-25 15:56:23 +01:00 |
|
|
coissac
|
6f28d2ab68
|
Patch a bug introduced by the new model for paired sequences
Former-commit-id: 7947e28ac8252b7ed46bdb9175077d412bad0aca
|
2023-02-24 10:23:26 +01:00 |
|
|
coissac
|
6ce3053409
|
Merge branch 'master' of git.metabarcoding.org:obitools/obitools4/obitools4
Former-commit-id: 042e2300185f1b399cc19ea4d710a7cb15cb015f
|
2023-02-23 23:50:57 +01:00 |
|
|
coissac
|
6c5fc8f65b
|
Save change in various files
Former-commit-id: 428f8ee77c584b79cc2ef45eef2902c3e0754c77
|
2023-02-23 23:45:41 +01:00 |
|
|
coissac
|
05323f960c
|
Start writing of the man pages
Former-commit-id: 533a8a6380a5a0b66314081a5ec2aeb973ebadec
|
2023-02-23 23:43:54 +01:00 |
|
|
coissac
|
c94b2974fb
|
Reorganization of the documentation book directory
Former-commit-id: 095acaf9c8649b0e527c6253dc79330feedac865
|
2023-02-23 23:41:24 +01:00 |
|
|
coissac
|
072b85e155
|
change the model for representing paired reads and extend its usage to other commands
|
2023-02-23 23:35:58 +01:00 |
|
|
coissac
|
ebb05fcdf7
|
code refactoring. Prefix function name having behaviour depending on command line option by the prefix CLI
|
2023-02-23 23:32:59 +01:00 |
|
|
coissac
|
0b8f35cbf6
|
Update Release-notes.md
|
2023-02-18 19:57:21 +01:00 |
|
|
coissac
|
a0ab14c205
|
Complete the documentation and add a Release note file
|
2023-02-18 19:54:21 +01:00 |
|
|
coissac
|
56722895e4
|
Adds to every obitools the ability to save in gzip compressed files
|
2023-02-18 12:06:52 +01:00 |
|
|
coissac
|
1a08ad4254
|
Flush the buffered io
|
2023-02-18 07:23:14 +01:00 |
|
|
coissac
|
3e1f88b37b
|
adds the subspc function to the gval language
|
2023-02-17 23:10:43 +01:00 |
|
|
coissac
|
d04eb915b3
|
adds a directory option to obidistribute
|
2023-02-17 22:52:53 +01:00 |
|
|
coissac
|
9554a32490
|
Add capacity to obidistribute to save gzipped files
|
2023-02-17 12:52:19 +01:00 |
|
|
coissac
|
6fd426d8be
|
Update obiapat.c
|
2023-02-17 11:29:27 +01:00 |
|
|
coissac
|
9cf9d4d504
|
Update obiapat.c by removing dependancy to asprintf by using snprintf
|
2023-02-17 11:28:14 +01:00 |
|
|
coissac
|
8458c0cd8b
|
Patch a bug in the genbank reader for the sequence longer than 10kb.
|
2023-02-17 10:54:03 +01:00 |
|
|
coissac
|
ed87f821eb
|
adds the _taxid suffix to the rank taxid attributes.
|
2023-02-16 16:13:55 +01:00 |
|
|
coissac
|
2975042982
|
Adds the possiblility to append to files to obidistribute
|
2023-02-16 16:13:13 +01:00 |
|
|
coissac
|
85349668d0
|
Add some options to obiannotate
|
2023-02-16 13:32:27 +01:00 |
|
|
coissac
|
6e36b22040
|
Normalise the managment of speed measure
|
2023-02-16 13:31:49 +01:00 |
|
|
coissac
|
f56363a100
|
Patch an embl/genbank parser error
|
2023-02-16 13:30:42 +01:00 |
|
|
coissac
|
08521c74e2
|
Adds Aho-Corasick matching to obiannotate
|
2023-02-09 15:59:11 +01:00 |
|
|
coissac
|
8b70b1a5d8
|
Last bug on sequence writing
|
2023-02-08 13:56:50 +01:00 |
|
|
coissac
|
526bf79c7f
|
Patch for some lost of data during sequence writing
|
2023-02-08 13:14:26 +01:00 |
|
|
coissac
|
4117cbdd08
|
Stabilize the obipairing output. whant run twice on the same dataset results are identical
|
2023-02-05 11:06:31 +01:00 |
|