Commit Graph

19 Commits

Author SHA1 Message Date
Eric Coissac
9965370d85 Manage a lock on StatsOnValues 2025-06-17 16:46:11 +02:00
Eric Coissac
7c4042df6b introduce obidefault 2025-01-27 17:12:45 +01:00
Eric Coissac
241f2286f2 remove the slice pool management 2024-09-24 16:31:30 +02:00
Eric Coissac
65ae82622e correction of several small bugs 2024-09-03 06:08:07 -03:00
Eric Coissac
1b1cd41fd3 Add some code refactoring from the blackboard branch 2024-08-02 12:35:46 +02:00
Eric Coissac
67665a6b40 Xprize update
Former-commit-id: d38919a897961e4d40da3b844057c3fb94fdb6d7
2024-07-25 18:09:03 -04:00
Eric Coissac
e40d0bfbe7 Debug fasta and fastq writer when the first sequence is hudge
Former-commit-id: d208ff838abb7e19e117067f6243298492d60f14
2024-06-26 18:39:42 +02:00
Eric Coissac
54a138196c Patch a bug in fasta and fastq reading
Former-commit-id: bcaa264b4c4a7c67617eb909b199176bf09913db
2024-06-21 14:28:57 +02:00
Eric Coissac
818ce87bab Patch some bugs in writing files
Former-commit-id: 612868a281dc0ecf4e6c5776973735e5c71bd517
2024-06-19 13:15:30 +02:00
Eric Coissac
73996bb0b7 Small change in consensus weight
Former-commit-id: 58bcc67044b82e4e1d9e0e52be336ae02ab248e9
2024-06-19 09:11:59 +02:00
Eric Coissac
61be8a55b1 Merge obiminion and obiconsensus
Former-commit-id: 49d65d671e9fe4454de60c20507c3d8df6e9c51c
2024-05-14 17:53:32 +02:00
Eric Coissac
7fcb0538a3 Cleaning of obiminion
Former-commit-id: 75148afd70e5006cc6855bcddc86506b099761a1
2024-05-14 11:45:46 +02:00
Eric Coissac
017030bcce Add obiminion first version
Former-commit-id: aa5ace7bd4d2266333715fca7094d1c3cbbb5e6d
2024-05-14 08:16:12 +02:00
Eric Coissac
3d1d9f32df Make obiconsensus using the count of the sequences
Former-commit-id: 7fc5292aeb225843a86cd85591a5405e35125e3d
2024-04-03 12:58:32 +02:00
8d77cc4133 Change path of the obitools pkg
Former-commit-id: 311cbf8df3b990b393c6f4885d62e74564423b65
2023-11-29 12:14:37 +01:00
e9dcacbf24 Correction of one base deletion in the consensus
Former-commit-id: 6aabd8bfdb5263a2285718cb2eca27628c0e717c
2023-04-19 09:12:12 +02:00
4bf041be62 Add some option to the obiconsensus command
Former-commit-id: cf30a404a4943e4527106c977b01712ef454e028
2023-03-28 21:23:27 +07:00
e8a8f746d3 few bug in the graph algorithm
Former-commit-id: b61bdd9f671e2f5e90d32c1beac1ed84efa5e05c
2023-03-27 22:43:45 +07:00
a33e471b39 First attempt for obiconsensus... The graph traversing algorithm is too simple
Former-commit-id: 0456e6c7fd55d6d0fcf9856c40386b976b912cba
2023-03-27 19:51:10 +07:00