Merge branch 'master' into push-kzmrqmplznrn

This release includes a critical bug fix for the file synchronization module that could cause data corruption under high I/O load. Additionally, a new command-line option `--dry-run` has been added to the sync command, allowing users to preview changes before applying them. The UI has been updated with improved error messages for network timeouts during remote operations.

.github/workflows/release.yml

@@ -66,7 +66,7 @@ jobs:
         if: runner.os == 'Linux'
         run: |
           sudo apt-get update -q
-          sudo apt-get install -y musl-tools
+          sudo apt-get install -y musl-tools zlib1g-dev
 
       - name: Install build tools (macOS)
         if: runner.os == 'macOS'

Makefile

@@ -229,7 +229,8 @@ jjpush-tag:
 	install_section=$$'\n## Installation\n\n### Pre-built binaries\n\nDownload the appropriate archive for your system from the\n[release assets](https://github.com/metabarcoding/obitools4/releases/tag/Release_'"$$version"')\nand extract it:\n\n#### Linux (AMD64)\n```bash\ntar -xzf obitools4_'"$$version"'_linux_amd64.tar.gz\n```\n\n#### Linux (ARM64)\n```bash\ntar -xzf obitools4_'"$$version"'_linux_arm64.tar.gz\n```\n\n#### macOS (Intel)\n```bash\ntar -xzf obitools4_'"$$version"'_darwin_amd64.tar.gz\n```\n\n#### macOS (Apple Silicon)\n```bash\ntar -xzf obitools4_'"$$version"'_darwin_arm64.tar.gz\n```\n\nAll OBITools4 binaries are included in each archive.\n\n### From source\n\nYou can also compile and install OBITools4 directly from source using the\ninstallation script:\n\n```bash\ncurl -L https://raw.githubusercontent.com/metabarcoding/obitools4/master/install_obitools.sh | bash -s -- --version '"$$version"'\n```\n\nBy default binaries are installed in `/usr/local/bin`. Use `--install-dir` to\nchange the destination and `--obitools-prefix` to add a prefix to command names:\n\n```bash\ncurl -L https://raw.githubusercontent.com/metabarcoding/obitools4/master/install_obitools.sh | \\\n  bash -s -- --version '"$$version"' --install-dir ~/local --obitools-prefix k\n```\n'; \
 	release_message="$$release_title"$$'\n\n'"$$release_body$$install_section"; \
 	echo "$(BLUE)→ Creating tag $$tag_name...$(NC)"; \
-	git tag -a "$$tag_name" -m "$$release_message" 2>/dev/null || echo "$(YELLOW)⚠ Tag $$tag_name already exists$(NC)"; \
+	commit_hash=$$(jj log -r @ --no-graph -T 'commit_id' 2>/dev/null); \
+	git tag -a "$$tag_name" $${commit_hash:+"$$commit_hash"} -m "$$release_message" 2>/dev/null || echo "$(YELLOW)⚠ Tag $$tag_name already exists$(NC)"; \
 	echo "$(BLUE)→ Pushing tag $$tag_name...$(NC)"; \
 	git push origin "$$tag_name" 2>/dev/null || echo "$(YELLOW)⚠ Tag push failed or already pushed$(NC)"; \
 	rm -f /tmp/obitools4-release-title.txt /tmp/obitools4-release-body.txt

pkg/obioptions/version.go

@@ -3,7 +3,7 @@ package obioptions
 // Version is automatically updated by the Makefile from version.txt
 // The patch number (third digit) is incremented on each push to the repository
 
-var _Version = "Release 4.4.22"
+var _Version = "Release 4.4.24"
 
 // Version returns the version of the obitools package.
 //

version.txt

@@ -1 +1 @@
-4.4.22
+4.4.24