13  Utilities

13.1 obicount

obicount counts the number of sequence records, the sum of the count attributes, and the sum of the length of all the sequences.

Example:

obicount seq.fasta  

Prints the number of sequence records contained in the seq.fasta file and the sum of their count attributes.

Options specific to the command

• --reads|-r Prints read counts.
• --symbols|-s Prints symbol counts.
• --variants|-v Prints variant counts.

13.2 obidistribute

13.3 obifind

Replace the ecofind original OBITools.