mirror of
https://github.com/metabarcoding/obitools4.git
synced 2026-03-25 21:40:52 +00:00
35 lines
882 B
Go
35 lines
882 B
Go
package main
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import (
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"os"
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"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obidefault"
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"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitools/obiconvert"
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"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitools/obijoin"
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"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiutils"
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"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obioptions"
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)
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func main() {
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obidefault.SetStrictReadWorker(2)
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obidefault.SetStrictWriteWorker(2)
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optionParser := obioptions.GenerateOptionParser(
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"obijoin",
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"merge annotations contained in a file to another file",
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obijoin.OptionSet)
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_, args := optionParser(os.Args)
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fs, err := obiconvert.CLIReadBioSequences(args...)
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obiconvert.OpenSequenceDataErrorMessage(args, err)
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joined := obijoin.CLIJoinSequences(fs)
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obiconvert.CLIWriteBioSequences(joined, true)
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obiutils.WaitForLastPipe()
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}
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