mirror of
https://github.com/metabarcoding/obitools4.git
synced 2026-03-26 14:00:51 +00:00
36 lines
843 B
Go
36 lines
843 B
Go
package main
|
|
|
|
import (
|
|
"os"
|
|
|
|
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obioptions"
|
|
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obitools/obiconvert"
|
|
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obitools/obimultiplex"
|
|
)
|
|
|
|
func main() {
|
|
|
|
// f, err := os.Create("cpu.pprof")
|
|
// if err != nil {
|
|
// log.Fatal(err)
|
|
// }
|
|
// pprof.StartCPUProfile(f)
|
|
// defer pprof.StopCPUProfile()
|
|
|
|
// ftrace, err := os.Create("cpu.trace")
|
|
// if err != nil {
|
|
// log.Fatal(err)
|
|
// }
|
|
// trace.Start(ftrace)
|
|
// defer trace.Stop()
|
|
|
|
optionParser := obioptions.GenerateOptionParser(obimultiplex.OptionSet)
|
|
|
|
_, args, _ := optionParser(os.Args)
|
|
|
|
sequences, _ := obiconvert.ReadBioSequencesBatch(args...)
|
|
amplicons, _ := obimultiplex.IExtractBarcodeBatches(sequences)
|
|
obiconvert.WriteBioSequencesBatch(amplicons, true)
|
|
amplicons.Wait()
|
|
}
|