mirror of https://github.com/metabarcoding/obitools4.git synced 2026-04-30 12:00:39 +00:00

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Eric Coissac 8c7017a99d ⬆️ version bump to v4.5

- Update obioptions.Version from "Release 4.4.29" to "/v/ Release v5"
- Update version.txt from 4.29 → .30
(automated by Makefile)

2026-04-13 13:34:53 +02:00

`obirefidx` Package Overview

The obirefidx package provides command-line option configuration for the obiuniq tool within the OBITools4 ecosystem.

Purpose: Extends generic option parsing to support obiuniq's specific flags.

Core Function:

func OptionSet(options *getoptions.GetOpt)

Behavior:
Delegates to obiconvert.OptionSet(false), inheriting all standard conversion options (e.g., input/output formats, filtering thresholds), but without enabling verbose mode (false → no extra logging).
Dependencies:
- getoptions: For robust CLI argument parsing.
- obiconvert: Shared conversion utilities and option definitions.
Semantic Role: Acts as a feature gate—ensuring only relevant obiconvert options are exposed to the user for deduplication tasks.
Use Case: Used during CLI initialization (e.g., obiuniq --input file.fastq) to validate and bind user-provided flags.

In essence, obirefidx ensures consistent, minimal option exposure for reference-based deduplication workflows in OBITools4.

obirefidx Package Overview