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https://github.com/metabarcoding/obitools4.git
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34 lines
858 B
Go
34 lines
858 B
Go
package main
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import (
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"os"
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"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obidefault"
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"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitools/obicleandb"
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"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitools/obiconvert"
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"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiutils"
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"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obioptions"
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)
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func main() {
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obidefault.SetBatchSize(10)
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optionParser := obioptions.GenerateOptionParser(
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"obicleandb",
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"clean-up reference databases",
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obicleandb.OptionSet)
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_, args := optionParser(os.Args)
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fs, err := obiconvert.CLIReadBioSequences(args...)
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obiconvert.OpenSequenceDataErrorMessage(args, err)
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cleaned := obicleandb.ICleanDB(fs)
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toconsume, _ := obiconvert.CLIWriteBioSequences(cleaned, false)
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toconsume.Consume()
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obiutils.WaitForLastPipe()
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}
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