mirror of
https://github.com/metabarcoding/obitools4.git
synced 2026-03-25 21:40:52 +00:00
54 lines
1.3 KiB
Go
54 lines
1.3 KiB
Go
package main
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import (
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"encoding/json"
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"fmt"
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"os"
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"gopkg.in/yaml.v3"
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"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obioptions"
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"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiseq"
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"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitools/obiconvert"
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"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitools/obisummary"
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)
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func main() {
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defer obiseq.LogBioSeqStatus()
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// go tool pprof -http=":8000" ./obipairing ./cpu.pprof
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// f, err := os.Create("cpu.pprof")
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// if err != nil {
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// log.Fatal(err)
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// }
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// pprof.StartCPUProfile(f)
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// defer pprof.StopCPUProfile()
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// go tool trace cpu.trace
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// ftrace, err := os.Create("cpu.trace")
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// if err != nil {
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// log.Fatal(err)
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// }
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// trace.Start(ftrace)
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// defer trace.Stop()
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optionParser := obioptions.GenerateOptionParser(obisummary.OptionSet)
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_, args := optionParser(os.Args)
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fs, err := obiconvert.CLIReadBioSequences(args...)
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obiconvert.OpenSequenceDataErrorMessage(args, err)
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summary := obisummary.ISummary(fs, obisummary.CLIMapSummary())
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if obisummary.CLIOutFormat() == "json" {
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output, _ := json.MarshalIndent(summary, "", " ")
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fmt.Print(string(output))
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} else {
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output, _ := yaml.Marshal(summary)
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fmt.Print(string(output))
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}
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fmt.Printf("\n")
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}
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