mirror of
https://github.com/metabarcoding/obitools4.git
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db98ddb241
This commit addresses a bug in the super k-mer implementation where the minimizer bijection property was not properly enforced. The fix ensures that: 1. All k-mers within a super k-mer share the same minimizer 2. Identical super k-mer sequences have the same minimizer The changes include: - Fixing the super k-mer iteration logic to properly validate the minimizer bijection property - Adding a comprehensive test suite (TestSuperKmerMinimizerBijection) that validates the intrinsic property of super k-mers - Updating the .gitignore file to properly track relevant files This resolves issues where the same sequence could be associated with different minimizers, violating the super k-mer definition.
35 lines
300 B
Plaintext
35 lines
300 B
Plaintext
**/cpu.pprof
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**/cpu.trace
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**/test
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**/bin
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**/vendor
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**/*.fastq
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**/*.fasta
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**/*.fastq.gz
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**/*.fasta.gz
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**/.DS_Store
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**/*.gml
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**/*.log
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**/xxx*
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**/*.sav
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**/*.old
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**/*.tgz
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**/*.yaml
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**/*.csv
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xx
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.rhistory
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/.vscode
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/build
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/bugs
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/ncbitaxo
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!/obitests/**
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!/sample/**
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LLM/**
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*_files
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entropy.html
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bug_id.txt
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