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31 lines
725 B
Go
31 lines
725 B
Go
package main
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import (
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"os"
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"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitools/obiconsensus"
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"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitools/obiconvert"
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"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiutils"
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"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obioptions"
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)
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func main() {
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optionParser := obioptions.GenerateOptionParser(
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"obiconsensus",
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"ONT reads denoising",
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obiconsensus.OptionSet)
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_, args := optionParser(os.Args)
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fs, err := obiconvert.CLIReadBioSequences(args...)
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obiconvert.OpenSequenceDataErrorMessage(args, err)
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cleaned := obiconsensus.CLIOBIMinion(fs)
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obiconvert.CLIWriteBioSequences(cleaned, true)
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obiutils.WaitForLastPipe()
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}
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