mirror of
https://github.com/metabarcoding/obitools4.git
synced 2025-12-11 02:00:26 +00:00
32 lines
1.2 KiB
Docker
32 lines
1.2 KiB
Docker
FROM ubuntu:lunar as builder
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LABEL dockerfile.version="1"
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LABEL software="obitools4"
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WORKDIR /
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RUN apt update --fix-missing && apt upgrade -y
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RUN apt install -y build-essential
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RUN apt install -y git tcsh bash gawk parallel gettext zlib1g-dev libglib2.0-0
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# RUN git clone https://git.metabarcoding.org/org-asm/org-annotate.git
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# RUN cd org-annotate/src && make && cd ../..
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# RUN cd /org-annotate/data/its/ITSx_db/HMMs && \
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# rm *.h3* && \
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# for f in *.hmm ; do /org-annotate/ports/i386-linux/bin/hmmpress $f ; done
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RUN apt install -y python3-pip python3-dev python3-venv
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RUN git clone https://git.metabarcoding.org/org-asm/org-asm.git
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RUN cd org-asm
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RUN python3 -m venv ../org-assembler
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RUN bash -c '../org-assembler/bin/pip3 install -r /org-asm/requirements.txt'
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RUN bash -c '../org-assembler/bin/python3 setup.py install --no-serenity'
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RUN cd ..
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# FROM ubuntu:lunar as phyloskims
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# WORKDIR /
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# RUN apt update --fix-missing && apt upgrade -y
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# RUN apt install -y tcsh bash gawk parallel zlib1g libglib2.0-0
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# COPY --from=builder /org-annotate /org-annotate
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# RUN rm -rf /org-annotate/src
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# COPY --from=builder /org-assembler /org-assembler
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# RUN mkdir -p /data
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