29 lines
763 B
Bash
29 lines
763 B
Bash
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#!/bin/bash
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#
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# splitgbk.sh:
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# Split a gbk file in multiple files
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# each containing a single sequence
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#
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#========================================================================================
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# -- CAUTION -- Works as long than the script
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# is not called through a symlink
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THIS_DIR="$(dirname ${BASH_SOURCE[0]})"
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source "${THIS_DIR}/../../../scripts/bash_init.sh"
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inputfile=$1
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dest=${inputfile/.*/}
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mkdir -p $dest
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$AwkCmd -v dest="$dest" '/^LOCUS/ {
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AC=$2;
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destfile = sprintf("%s/%s.gbk", dest, AC);
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}
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{
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print $0 >> destfile
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}
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/^\/\// {
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close(destfile);
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}
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' $inputfile
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