2015-10-02 21:12:35 +02:00
|
|
|
#
|
|
|
|
# ------------------------------------------
|
|
|
|
# ORG.Annot - Organelle Annotator
|
|
|
|
# version 1.0.0 - Sept 2015
|
|
|
|
# ------------------------------------------
|
|
|
|
#
|
|
|
|
# this directory contains sources for tools used by ORG.Annot
|
|
|
|
# this is only useful if you need to recompile binaries
|
|
|
|
#
|
|
|
|
# -------------------------
|
|
|
|
# -0- Requirements
|
|
|
|
# -------------------------
|
|
|
|
#
|
|
|
|
# gnu tar : version >= 1.15
|
|
|
|
# gnu make : version >= 3.81
|
|
|
|
# gcc and g++ : version >= 3.4.6
|
2015-11-08 14:28:57 +01:00
|
|
|
# gawk : version >= 4.0.1
|
2015-10-02 21:12:35 +02:00
|
|
|
#
|
|
|
|
# note: valid versions of gnu tar and make are in _unix_tools_
|
|
|
|
#
|
|
|
|
#
|
|
|
|
# -------------------------
|
|
|
|
# -1- Checking configuration files
|
|
|
|
# -------------------------
|
|
|
|
#
|
|
|
|
# issue:
|
|
|
|
# $ config/guess_port
|
|
|
|
#
|
|
|
|
# if output is 'unknown <mach>:<sys>:<rel>'
|
|
|
|
# then you should :
|
|
|
|
# - add a port entry in guess_port for <mach>:<sys>:<rel>
|
|
|
|
# - create a ports/<port>.conf configuration file
|
|
|
|
# (the best is to start from another port file,
|
|
|
|
# choose whatever looks closest)
|
|
|
|
#
|
|
|
|
# if output is something else (e.g. i386-darwin)
|
|
|
|
# then the configuration files are already defined for your port
|
|
|
|
#
|
|
|
|
# -------------------------
|
|
|
|
# -2- Compiling
|
|
|
|
# -------------------------
|
|
|
|
#
|
|
|
|
# just run make from 'src':
|
|
|
|
#
|
|
|
|
# $ cd src
|
|
|
|
# $ make
|
|
|
|
#
|
|
|
|
#
|
|
|
|
# if everything runs fine, you may then issue:
|
|
|
|
#
|
|
|
|
# $ make clean
|
|
|
|
#
|
|
|
|
# to cleanup unecessary files
|
|
|
|
#
|
|
|
|
# at this point all binaries should be located in ports/<PORTNAME>/bin
|
|
|
|
#
|
|
|
|
# -------------------------
|
|
|
|
# -3- Recompiling a port
|
|
|
|
# -------------------------
|
|
|
|
#
|
|
|
|
# if you need to fully recompile a port
|
|
|
|
#
|
|
|
|
# $ cd src
|
|
|
|
# $ make portclean
|
|
|
|
# $ make
|
|
|
|
# $ make clean
|
|
|
|
#
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|