annotate/detectors/normalize/tools/selectViridiplantae.sh

#!/bin/bash

grep -A 1 '  ORGANISM' $* | \
  grep -B 1 Viridiplantae | \
  gawk '{print $1}' | \
  grep '\.gbk' | \
  sed -E 's/(^.*\.gbk).$/\1/' | \
  uniq
Add scripts to generate reference DBs for LSC and SSC Former-commit-id: 77fd69c9687bfc7cfd3305299c7c81d2a9eddada Former-commit-id: 4d09933673c30d6a9b2b9cc985b33ef23d7a99f4 2015-10-07 11:32:17 -03:00			`#!/bin/bash`

			`grep -A 1 ' ORGANISM' $* \| \`
			`grep -B 1 Viridiplantae \| \`
Switch from awk to gawk Former-commit-id: 70b104ab89d4c90a35925dbbcacdafaf6c1f2836 Former-commit-id: bf29abf66345cbc0ca81461064dcca63dfd4c15c 2015-11-08 19:33:00 +01:00			`gawk '{print $1}' \| \`
Add scripts to generate reference DBs for LSC and SSC Former-commit-id: 77fd69c9687bfc7cfd3305299c7c81d2a9eddada Former-commit-id: 4d09933673c30d6a9b2b9cc985b33ef23d7a99f4 2015-10-07 11:32:17 -03:00			`grep '\.gbk' \| \`
			`sed -E 's/(^.*\.gbk).$/\1/' \| \`
			`uniq`