23 lines
696 B
Bash
23 lines
696 B
Bash
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#!/bin/bash
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# -- CAUTION -- Works as long than the script
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# is not called through a symlink
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THIS_DIR="$(dirname ${BASH_SOURCE[0]})"
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source "${THIS_DIR}/../../../scripts/bash_init.sh"
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( \
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for f in $1/*.gbk* ; do \
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if [[ "$f" =~ \.gz$ ]] ; then \
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GREP=zgrep; \
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else \
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GREP=grep; \
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fi; \
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${GREP} -H -A 1 ' ORGANISM' $f; \
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done \
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) | \
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grep -B 1 Metazoa | \
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$AwkCmd '{print $1}' | \
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grep '\.gbk' | \
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sed -E 's/(^.*\.gbk(.gz)?).$/\1/' | \
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uniq
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