19 lines
860 B
Plaintext
19 lines
860 B
Plaintext
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Commands used to build the plast_RRNA.hmm
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hmmbuild --dna -n RRNA_23S --wpb plast_RRNA_23S.hmm 23S.goodali.fst
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hmmbuild --dna -n RRNA_16S --wpb plast_RRNA_16S.hmm 16S.goodali.fst
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hmmbuild --dna -n RRNA_5S --wpb plast_RRNA_5S.hmm 5S.goodali.fst
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hmmbuild --dna -n RRNA_4.5S --wpb plast_RRNA_4.5S.hmm 4.5S.goodali.fst
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revcomp 23S.goodali.fst > 23S.goodali.rc.fst
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revcomp 16S.goodali.fst > 16S.goodali.rc.fst
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revcomp 5S.goodali.fst > 5S.goodali.rc.fst
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revcomp 4.5S.goodali.fst > 4.5S.goodali.rc.fst
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hmmbuild --dna -n RRNA_23S_RC --wpb plast_RRNA_23S_RC.hmm 23S.goodali.rc.fst
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hmmbuild --dna -n RRNA_16S_RC --wpb plast_RRNA_16S_RC.hmm 16S.goodali.rc.fst
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hmmbuild --dna -n RRNA_5S_RC --wpb plast_RRNA_5S_RC.hmm 5S.goodali.rc.fst
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hmmbuild --dna -n RRNA_4.5S_RC --wpb plast_RRNA_4.5S_RC.hmm 4.5S.goodali.rc.fst
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cat plast_RRNA_*.hmm > plast_RRNA.hmm
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