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First version including the rRNA detector

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Former-commit-id: 865e2626c7cd92ea596aedefe2b760b3eaaa9c77
Former-commit-id: 94a2e642328eb679660c6ac5a6cb6803c2083632
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Eric Coissac
2015-10-12 07:15:08 -03:00
parent bff0beaeee
commit 01c5880ace
530 changed files with 140563 additions and 19944 deletions
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data/rrna/rRNA_models.log Normal file
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2015-10-11 16:51:15 [OA INFO ] 96661 -- Selecting Viridiplantae genebank entries...
2015-10-11 16:51:24 [OA INFO ] 96661 -- --> 695 entries selected
2015-10-11 16:51:24 [OA INFO ] 96661 -- Done
2015-10-11 16:51:24 [OA INFO ] 96661 -- Extracting 4.5S rRNA sequences...
2015-10-11 16:52:21 [OA INFO ] 96661 -- --> 600 retreived sequences
2015-10-11 16:52:21 [OA INFO ] 96661 -- --> 130 distinct sequences
2015-10-11 16:52:21 [OA INFO ] 96661 -- Done
2015-10-11 16:52:21 [OA INFO ] 96661 -- Clustering 4.5S rRNA sequences...
2015-10-11 16:52:22 [OA INFO ] 96661 -- Done
2015-10-11 16:52:22 [OA INFO ] 96661 -- Installing 4.5S rRNA sequences...
2015-10-11 16:52:22 [OA INFO ] 96661 -- Done
2015-10-11 16:52:22 [OA INFO ] 96661 -- Extracting 5S rRNA sequences...
2015-10-11 16:53:21 [OA INFO ] 96661 -- --> 691 retreived sequences
2015-10-11 16:53:21 [OA INFO ] 96661 -- --> 228 distinct sequences
2015-10-11 16:53:21 [OA INFO ] 96661 -- Done
2015-10-11 16:53:21 [OA INFO ] 96661 -- Clustering 5S rRNA sequences...
2015-10-11 16:53:27 [OA INFO ] 96661 -- Done
2015-10-11 16:53:27 [OA INFO ] 96661 -- Installing 5S rRNA sequences...
2015-10-11 16:53:27 [OA INFO ] 96661 -- Done
2015-10-11 16:53:27 [OA INFO ] 96661 -- Extracting 16S rRNA sequences...
2015-10-11 16:54:28 [OA INFO ] 96661 -- --> 690 retreived sequences
2015-10-11 16:54:29 [OA INFO ] 96661 -- --> 415 distinct sequences
2015-10-11 16:54:29 [OA INFO ] 96661 -- Done
2015-10-11 16:54:29 [OA INFO ] 96661 -- Clustering 16S rRNA sequences...
2015-10-11 16:56:41 [OA INFO ] 96661 -- Done
2015-10-11 16:56:41 [OA INFO ] 96661 -- Installing 16S rRNA sequences...
2015-10-11 16:56:41 [OA INFO ] 96661 -- Done
2015-10-11 16:56:41 [OA INFO ] 96661 -- Extracting 23S rRNA sequences...
2015-10-11 16:57:43 [OA INFO ] 96661 -- --> 690 retreived sequences
2015-10-11 16:57:44 [OA INFO ] 96661 -- --> 519 distinct sequences
2015-10-11 16:57:44 [OA INFO ] 96661 -- Done
2015-10-11 16:57:44 [OA INFO ] 96661 -- Clustering 23S rRNA sequences...
2015-10-11 17:09:32 [OA INFO ] 96661 -- Done
2015-10-11 17:09:32 [OA INFO ] 96661 -- Installing 23S rRNA sequences...
2015-10-11 17:09:33 [OA INFO ] 96661 -- Done