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First version including the rRNA detector

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Former-commit-id: 865e2626c7cd92ea596aedefe2b760b3eaaa9c77
Former-commit-id: 94a2e642328eb679660c6ac5a6cb6803c2083632
This commit is contained in:
Eric Coissac
2015-10-12 07:15:08 -03:00
parent bff0beaeee
commit 01c5880ace
530 changed files with 140563 additions and 19944 deletions
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2
detectors/rrna/tools/extract_ref16S.sh
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@ -39,7 +39,7 @@
sequence=sequence seq \
} \
/^\/\// && FROM \
{print ">"AC"_16S Strand="STRAND";", \
{print ">RRNA16S_"AC" Strand="STRAND";", \
"cut="FROM".."TO";", \
"seq_length="LENGTH";"; \
SS=substr(sequence,FROM,LENGTH); \