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First version including the rRNA detector

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Former-commit-id: 865e2626c7cd92ea596aedefe2b760b3eaaa9c77
Former-commit-id: 94a2e642328eb679660c6ac5a6cb6803c2083632
This commit is contained in:
Eric Coissac
2015-10-12 07:15:08 -03:00
parent bff0beaeee
commit 01c5880ace
530 changed files with 140563 additions and 19944 deletions
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4
detectors/rrna/tools/extract_ref4.5S.sh
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@ -28,7 +28,7 @@
sub("complement\\(","",LOCUS); \
sub("\\)","",LOCUS); \
} \
/4.5S/ {split(LOCUS,POS,"."); \
/4\.5S/ {split(LOCUS,POS,"."); \
FROM=POS[1]; \
TO=POS[3]; \
LENGTH=TO-FROM+1 \
@ -39,7 +39,7 @@
sequence=sequence seq \
} \
/^\/\// && FROM \
{print ">"AC"_4.5S Strand="STRAND";", \
{print ">RRNA4.5S_"AC" Strand="STRAND";", \
"cut="FROM".."TO";", \
"seq_length="LENGTH";"; \
SS=substr(sequence,FROM,LENGTH); \