PhyloSkims/annotate
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

Add locus tag to trna

Browse Source
This commit is contained in:
Eric Coissac
2025-05-27 15:20:55 +02:00
parent 28df0c35c1
commit 058d7056ef
1 changed files with 8 additions and 4 deletions
Download Patch File Download Diff File Expand all files Collapse all files

10
detectors/nucrrna/bin/go_nucrrna.sh
View File

@ -41,22 +41,25 @@ pushTmpDir ORG.its
if [[ ${#ITS1[@]}=="2" ]] ; then if [[ ${#ITS1[@]} == "2" ]] ; then
echo "FT misc_RNA ${ITS1[0]}..${ITS1[1]}" echo "FT misc_RNA ${ITS1[0]}..${ITS1[1]}"
echo 'FT /gene="ITS1"' echo 'FT /gene="ITS1"'
echo 'FT /note="internal transcribed spacer 1, ITS1"' echo 'FT /note="internal transcribed spacer 1, ITS1"'
echo 'FT /locus_tag=""'
fi fi
if [[ ${#TSU[@]}=="2" ]] ; then if [[ ${#TSU[@]} == "2" ]] ; then
echo "FT rRNA ${TSU[0]}..${TSU[1]}" echo "FT rRNA ${TSU[0]}..${TSU[1]}"
echo 'FT /gene="5.8S rRNA"' echo 'FT /gene="5.8S rRNA"'
echo 'FT /product="5.8S ribosomal RNA"' echo 'FT /product="5.8S ribosomal RNA"'
echo 'FT /locus_tag=""'
fi fi
if [[ ${#ITS2[@]}=="2" ]] ; then if [[ ${#ITS2[@]} == "2" ]] ; then
echo "FT misc_RNA ${ITS2[0]}..${ITS2[1]}" echo "FT misc_RNA ${ITS2[0]}..${ITS2[1]}"
echo 'FT /gene="ITS2"' echo 'FT /gene="ITS2"'
echo 'FT /note="internal transcribed spacer 2, ITS2"' echo 'FT /note="internal transcribed spacer 2, ITS2"'
echo 'FT /locus_tag=""'
fi fi
@ -80,6 +83,7 @@ pushTmpDir ORG.its
print "FT rRNA " loc print "FT rRNA " loc
print "FT /gene=\""rrna" rRNA\"" print "FT /gene=\""rrna" rRNA\""
print "FT /product=\""rrna" ribosomal RNA\"" print "FT /product=\""rrna" ribosomal RNA\""
print "FT /locus_tag=\"\""
full=0 full=0
}' }'