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Add locus tag to trna

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This commit is contained in:
Eric Coissac
2025-05-27 15:20:55 +02:00
parent 28df0c35c1
commit 058d7056ef
1 changed files with 8 additions and 4 deletions
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10
detectors/nucrrna/bin/go_nucrrna.sh
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@ -41,22 +41,25 @@ pushTmpDir ORG.its
if [[ ${#ITS1[@]}=="2" ]] ; then
if [[ ${#ITS1[@]} == "2" ]] ; then
echo "FT misc_RNA ${ITS1[0]}..${ITS1[1]}"
echo 'FT /gene="ITS1"'
echo 'FT /note="internal transcribed spacer 1, ITS1"'
echo 'FT /locus_tag=""'
fi
if [[ ${#TSU[@]}=="2" ]] ; then
if [[ ${#TSU[@]} == "2" ]] ; then
echo "FT rRNA ${TSU[0]}..${TSU[1]}"
echo 'FT /gene="5.8S rRNA"'
echo 'FT /product="5.8S ribosomal RNA"'
echo 'FT /locus_tag=""'
fi
if [[ ${#ITS2[@]}=="2" ]] ; then
if [[ ${#ITS2[@]} == "2" ]] ; then
echo "FT misc_RNA ${ITS2[0]}..${ITS2[1]}"
echo 'FT /gene="ITS2"'
echo 'FT /note="internal transcribed spacer 2, ITS2"'
echo 'FT /locus_tag=""'
fi
@ -80,6 +83,7 @@ pushTmpDir ORG.its
print "FT rRNA " loc
print "FT /gene=\""rrna" rRNA\""
print "FT /product=\""rrna" ribosomal RNA\""
print "FT /locus_tag=\"\""
full=0
}'