PhyloSkims/annotate
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

Patch RPS12 detection

Browse Source
This commit is contained in:
Eric Coissac
2025-05-25 13:41:47 +02:00
parent 9205fd1ed1
commit 17908e0df2
3 changed files with 138 additions and 15 deletions
Download Patch File Download Diff File Expand all files Collapse all files

4
org-annotate.sh
View File

@ -507,9 +507,9 @@ pushTmpDir ORG.organnot
if [[ ! -z "${sequence}" ]] ; then
echo "${sequence}" > toannotate.fasta
sl=$(seqlength "toannotate.fasta")
if (( sl >= minlength )) ; then
loginfo "Annotated genome length: $sl bp"
seqid=$($AwkCmd '(NR==1) {print substr($1,2,1000)}' toannotate.fasta)
# seqid=$(tr "." "_" <<< ${seqid})