Switch from awk to gawk
Former-commit-id: 70b104ab89d4c90a35925dbbcacdafaf6c1f2836 Former-commit-id: bf29abf66345cbc0ca81461064dcca63dfd4c15c
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@ -33,13 +33,13 @@ pushTmpDir ORG.rrna
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RRNA=$(basename ${QUERY})
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hmmsearch --max ${RRNADB} ${QUERY} | \
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awk '/Query: / { \
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$AwkCmd '/Query: / { \
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profil=$2; \
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match($3,"[0-9][0-9]*");\
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lprof=substr($3,RSTART,RLENGTH)} \
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/ [0-9][0-9]* ! / { \
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print profil,lprof,$7,$8,$10,$11}' | \
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awk '($3 <=5) && (($2-$4) <=5) { \
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$AwkCmd '($3 <=5) && (($2-$4) <=5) { \
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full=1;$5=$5-$3+1;$6=$6+($2-$4)}
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{loc=$5".."$6} \
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($1 ~ /_RC$/) { \
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