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Switch from awk to gawk

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Former-commit-id: 70b104ab89d4c90a35925dbbcacdafaf6c1f2836
Former-commit-id: bf29abf66345cbc0ca81461064dcca63dfd4c15c
This commit is contained in:
Eric Coissac
2015-11-08 19:33:00 +01:00
parent 6fa63daf3f
commit 2261fa1c48
16 changed files with 52 additions and 49 deletions
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2
detectors/rrna/tools/revcomp_alignments.sh
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@ -11,7 +11,7 @@ source "${THIS_DIR}/../../../scripts/bash_init.sh"
function revcomp {
awk 'function printfasta(seq) { \
gawk 'function printfasta(seq) { \
seqlen=length(seq); \
for (i=1; i <= seqlen; i+=60) \
print substr(seq,i,60); \