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modified:   .gitignore
	new file:   data/cds/sp_chlorodb/parameters.sh
	deleted:    data/ir/LSC_RefDB.fasta
	deleted:    data/ir/SSC_RefDB.fasta
	modified:   detectors/cds/bin/go_cds.sh
	modified:   detectors/normalize/lib/lookforIR.lib.sh
	modified:   detectors/normalize/lib/selectIR.py
	modified:   organnot/Dockerfile
	new file:   organnot/README.md
	new file:   organnot/dorgannot
	deleted:    ports/.DS_Store
	deleted:    src/ncbiblast/binaries/.gitignore
	deleted:    src/prokov/lxpack/tests/S.fasta
	deleted:    src/prokov/lxpack/tests/St.fasta
	deleted:    src/prokov/lxpack/tests/Stt.fasta
	deleted:    src/prokov/lxpack/tests/aS.fasta
	deleted:    src/prokov/lxpack/tests/aSt.fasta
	deleted:    src/prokov/lxpack/tests/aStt.fasta
	deleted:    src/prokov/lxpack/tests/aaS.fasta
	deleted:    src/prokov/lxpack/tests/aaSt.fasta
	deleted:    src/prokov/lxpack/tests/aaStt.fasta
	new file:   src/repseek/repseek-2014.09.tgz
This commit is contained in:
Eric Coissac
2025-03-05 21:56:39 +01:00
parent 5d09615f27
commit 4b71fe8c4c
22 changed files with 94 additions and 75646 deletions
Download Patch File Download Diff File Expand all files Collapse all files

2
src/ncbiblast/binaries/.gitignore vendored
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bin.*
.DS_Store

34
src/prokov/lxpack/tests/S.fasta
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@ -1,34 +0,0 @@
>test
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
ATGAAAACTGAAAACGCAAAAACAAATCAAACATTAGTTGAGAATTCACT
GAACACACAATTATCAAACTGGTTTCTTTTATACTCTAAGCTCCACCGTT
TCCATTGGTATGTGAAAGGGCCTCATTTCTTTACATTGCACGAGAAATTT
GAAGAACTTTATGACCATGCGGCTGAAACAGTGGATACCATCGCTGAGCG
CCTGCTGGCGATTGGCGGACAGCCTGTTGCCACAGTGAAAGAATACACTG
AGCATGCATCTATCACAGACGGCGGAAACGAAACATCAGCATCAGAAATG
GTACAAGCATTGGTAAACGACTACAAACAAATCAGCAGCGAATCTAAATT
CGTGATCGGCCTGGCTGAAGAAAATCAAGACAATGCGACAGCGGACTTGT
TTGTCGGATTAATTGAAGAAGTTGAAAAACAAGTGTGGATGCTTTCCTCT
TATTTAGGGTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTACCCTA
AATAAGAGGAAAGCATCCACACTTGTTTTTCAACTTCTTCAATTAATCCG
ACAAACAAGTCCGCTGTCGCATTGTCTTGATTTTCTTCAGCCAGGCCGAT
CACGAATTTAGATTCGCTGCTGATTTGTTTGTAGTCGTTTACCAATGCTT
GTACCATTTCTGATGCTGATGTTTCGTTTCCGCCGTCTGTGATAGATGCA
TGCTCAGTGTATTCTTTCACTGTGGCAACAGGCTGTCCGCCAATCGCCAG
CAGGCGCTCAGCGATGGTATCCACTGTTTCAGCCGCATGGTCATAAAGTT
CTTCAAATTTCTCGTGCAATGTAAAGAAATGAGGCCCTTTCACATACCAA
TGGAAACGGTGGAGCTTAGAGTATAAAAGAAACCAGTTTGATAATTGTGT
GTTCAGTGAATTCTCAACTAATGTTTGATTTGTTTTTGCGTTTTCAGTTT
TCAT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

35
src/prokov/lxpack/tests/St.fasta
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@ -1,35 +0,0 @@
>test
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
ATGAAAACTGAAAACGCAAAAACAAATCAAACATTAGTTGAGAATTCACT
GAACACACAATTATCAAACTGGTTTCTTTTATACTCTAAGCTCCACCGTT
TCCATTGGTATGTGAAAGGGCCTCATTTCTTTACATTGCACGAGAAATTT
GAAGAACTTTATGACCATGCGGCTGAAACAGTGGATACCATCGCTGAGCG
CCTGCTGGCGATTGGCGGACAGCCTGTTGCCACAGTGAAAGAATACACTG
AGCATGCATCTATCACAGACGGCGGAAACGAAACATCAGCATCAGAAATG
GTACAAGCATTGGTAAACGACTACAAACAAATCAGCAGCGAATCTAAATT
CGTGATCGGCCTGGCTGAAGAAAATCAAGACAATGCGACAGCGGACTTGT
TTGTCGGATTAATTGAAGAAGTTGAAAAACAAGTGTGGATGCTTTCCTCT
TATTTAGGGTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTACCCTA
AATAAGAGGAAAGCATCCACACTTGTTTTTCAACTTCTTCAATTAATCCG
ACAAACAAGTCCGCTGTCGCATTGTCTTGATTTTCTTCAGCCAGGCCGAT
CACGAATTTAGATTCGCTGCTGATTTGTTTGTAGTCGTTTACCAATGCTT
GTACCATTTCTGATGCTGATGTTTCGTTTCCGCCGTCTGTGATAGATGCA
TGCTCAGTGTATTCTTTCACTGTGGCAACAGGCTGTCCGCCAATCGCCAG
CAGGCGCTCAGCGATGGTATCCACTGTTTCAGCCGCATGGTCATAAAGTT
CTTCAAATTTCTCGTGCAATGTAAAGAAATGAGGCCCTTTCACATACCAA
TGGAAACGGTGGAGCTTAGAGTATAAAAGAAACCAGTTTGATAATTGTGT
GTTCAGTGAATTCTCAACTAATGTTTGATTTGTTTTTGCGTTTTCAGTTT
TCAT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
T

35
src/prokov/lxpack/tests/Stt.fasta
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@ -1,35 +0,0 @@
>test
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
ATGAAAACTGAAAACGCAAAAACAAATCAAACATTAGTTGAGAATTCACT
GAACACACAATTATCAAACTGGTTTCTTTTATACTCTAAGCTCCACCGTT
TCCATTGGTATGTGAAAGGGCCTCATTTCTTTACATTGCACGAGAAATTT
GAAGAACTTTATGACCATGCGGCTGAAACAGTGGATACCATCGCTGAGCG
CCTGCTGGCGATTGGCGGACAGCCTGTTGCCACAGTGAAAGAATACACTG
AGCATGCATCTATCACAGACGGCGGAAACGAAACATCAGCATCAGAAATG
GTACAAGCATTGGTAAACGACTACAAACAAATCAGCAGCGAATCTAAATT
CGTGATCGGCCTGGCTGAAGAAAATCAAGACAATGCGACAGCGGACTTGT
TTGTCGGATTAATTGAAGAAGTTGAAAAACAAGTGTGGATGCTTTCCTCT
TATTTAGGGTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTACCCTA
AATAAGAGGAAAGCATCCACACTTGTTTTTCAACTTCTTCAATTAATCCG
ACAAACAAGTCCGCTGTCGCATTGTCTTGATTTTCTTCAGCCAGGCCGAT
CACGAATTTAGATTCGCTGCTGATTTGTTTGTAGTCGTTTACCAATGCTT
GTACCATTTCTGATGCTGATGTTTCGTTTCCGCCGTCTGTGATAGATGCA
TGCTCAGTGTATTCTTTCACTGTGGCAACAGGCTGTCCGCCAATCGCCAG
CAGGCGCTCAGCGATGGTATCCACTGTTTCAGCCGCATGGTCATAAAGTT
CTTCAAATTTCTCGTGCAATGTAAAGAAATGAGGCCCTTTCACATACCAA
TGGAAACGGTGGAGCTTAGAGTATAAAAGAAACCAGTTTGATAATTGTGT
GTTCAGTGAATTCTCAACTAATGTTTGATTTGTTTTTGCGTTTTCAGTTT
TCAT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TT

35
src/prokov/lxpack/tests/aS.fasta
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@ -1,35 +0,0 @@
>test
A
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
ATGAAAACTGAAAACGCAAAAACAAATCAAACATTAGTTGAGAATTCACT
GAACACACAATTATCAAACTGGTTTCTTTTATACTCTAAGCTCCACCGTT
TCCATTGGTATGTGAAAGGGCCTCATTTCTTTACATTGCACGAGAAATTT
GAAGAACTTTATGACCATGCGGCTGAAACAGTGGATACCATCGCTGAGCG
CCTGCTGGCGATTGGCGGACAGCCTGTTGCCACAGTGAAAGAATACACTG
AGCATGCATCTATCACAGACGGCGGAAACGAAACATCAGCATCAGAAATG
GTACAAGCATTGGTAAACGACTACAAACAAATCAGCAGCGAATCTAAATT
CGTGATCGGCCTGGCTGAAGAAAATCAAGACAATGCGACAGCGGACTTGT
TTGTCGGATTAATTGAAGAAGTTGAAAAACAAGTGTGGATGCTTTCCTCT
TATTTAGGGTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTACCCTA
AATAAGAGGAAAGCATCCACACTTGTTTTTCAACTTCTTCAATTAATCCG
ACAAACAAGTCCGCTGTCGCATTGTCTTGATTTTCTTCAGCCAGGCCGAT
CACGAATTTAGATTCGCTGCTGATTTGTTTGTAGTCGTTTACCAATGCTT
GTACCATTTCTGATGCTGATGTTTCGTTTCCGCCGTCTGTGATAGATGCA
TGCTCAGTGTATTCTTTCACTGTGGCAACAGGCTGTCCGCCAATCGCCAG
CAGGCGCTCAGCGATGGTATCCACTGTTTCAGCCGCATGGTCATAAAGTT
CTTCAAATTTCTCGTGCAATGTAAAGAAATGAGGCCCTTTCACATACCAA
TGGAAACGGTGGAGCTTAGAGTATAAAAGAAACCAGTTTGATAATTGTGT
GTTCAGTGAATTCTCAACTAATGTTTGATTTGTTTTTGCGTTTTCAGTTT
TCAT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

36
src/prokov/lxpack/tests/aSt.fasta
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@ -1,36 +0,0 @@
>test
A
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
ATGAAAACTGAAAACGCAAAAACAAATCAAACATTAGTTGAGAATTCACT
GAACACACAATTATCAAACTGGTTTCTTTTATACTCTAAGCTCCACCGTT
TCCATTGGTATGTGAAAGGGCCTCATTTCTTTACATTGCACGAGAAATTT
GAAGAACTTTATGACCATGCGGCTGAAACAGTGGATACCATCGCTGAGCG
CCTGCTGGCGATTGGCGGACAGCCTGTTGCCACAGTGAAAGAATACACTG
AGCATGCATCTATCACAGACGGCGGAAACGAAACATCAGCATCAGAAATG
GTACAAGCATTGGTAAACGACTACAAACAAATCAGCAGCGAATCTAAATT
CGTGATCGGCCTGGCTGAAGAAAATCAAGACAATGCGACAGCGGACTTGT
TTGTCGGATTAATTGAAGAAGTTGAAAAACAAGTGTGGATGCTTTCCTCT
TATTTAGGGTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTACCCTA
AATAAGAGGAAAGCATCCACACTTGTTTTTCAACTTCTTCAATTAATCCG
ACAAACAAGTCCGCTGTCGCATTGTCTTGATTTTCTTCAGCCAGGCCGAT
CACGAATTTAGATTCGCTGCTGATTTGTTTGTAGTCGTTTACCAATGCTT
GTACCATTTCTGATGCTGATGTTTCGTTTCCGCCGTCTGTGATAGATGCA
TGCTCAGTGTATTCTTTCACTGTGGCAACAGGCTGTCCGCCAATCGCCAG
CAGGCGCTCAGCGATGGTATCCACTGTTTCAGCCGCATGGTCATAAAGTT
CTTCAAATTTCTCGTGCAATGTAAAGAAATGAGGCCCTTTCACATACCAA
TGGAAACGGTGGAGCTTAGAGTATAAAAGAAACCAGTTTGATAATTGTGT
GTTCAGTGAATTCTCAACTAATGTTTGATTTGTTTTTGCGTTTTCAGTTT
TCAT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
T

36
src/prokov/lxpack/tests/aStt.fasta
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@ -1,36 +0,0 @@
>test
A
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
ATGAAAACTGAAAACGCAAAAACAAATCAAACATTAGTTGAGAATTCACT
GAACACACAATTATCAAACTGGTTTCTTTTATACTCTAAGCTCCACCGTT
TCCATTGGTATGTGAAAGGGCCTCATTTCTTTACATTGCACGAGAAATTT
GAAGAACTTTATGACCATGCGGCTGAAACAGTGGATACCATCGCTGAGCG
CCTGCTGGCGATTGGCGGACAGCCTGTTGCCACAGTGAAAGAATACACTG
AGCATGCATCTATCACAGACGGCGGAAACGAAACATCAGCATCAGAAATG
GTACAAGCATTGGTAAACGACTACAAACAAATCAGCAGCGAATCTAAATT
CGTGATCGGCCTGGCTGAAGAAAATCAAGACAATGCGACAGCGGACTTGT
TTGTCGGATTAATTGAAGAAGTTGAAAAACAAGTGTGGATGCTTTCCTCT
TATTTAGGGTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTACCCTA
AATAAGAGGAAAGCATCCACACTTGTTTTTCAACTTCTTCAATTAATCCG
ACAAACAAGTCCGCTGTCGCATTGTCTTGATTTTCTTCAGCCAGGCCGAT
CACGAATTTAGATTCGCTGCTGATTTGTTTGTAGTCGTTTACCAATGCTT
GTACCATTTCTGATGCTGATGTTTCGTTTCCGCCGTCTGTGATAGATGCA
TGCTCAGTGTATTCTTTCACTGTGGCAACAGGCTGTCCGCCAATCGCCAG
CAGGCGCTCAGCGATGGTATCCACTGTTTCAGCCGCATGGTCATAAAGTT
CTTCAAATTTCTCGTGCAATGTAAAGAAATGAGGCCCTTTCACATACCAA
TGGAAACGGTGGAGCTTAGAGTATAAAAGAAACCAGTTTGATAATTGTGT
GTTCAGTGAATTCTCAACTAATGTTTGATTTGTTTTTGCGTTTTCAGTTT
TCAT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TT

35
src/prokov/lxpack/tests/aaS.fasta
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@ -1,35 +0,0 @@
>test
AA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
ATGAAAACTGAAAACGCAAAAACAAATCAAACATTAGTTGAGAATTCACT
GAACACACAATTATCAAACTGGTTTCTTTTATACTCTAAGCTCCACCGTT
TCCATTGGTATGTGAAAGGGCCTCATTTCTTTACATTGCACGAGAAATTT
GAAGAACTTTATGACCATGCGGCTGAAACAGTGGATACCATCGCTGAGCG
CCTGCTGGCGATTGGCGGACAGCCTGTTGCCACAGTGAAAGAATACACTG
AGCATGCATCTATCACAGACGGCGGAAACGAAACATCAGCATCAGAAATG
GTACAAGCATTGGTAAACGACTACAAACAAATCAGCAGCGAATCTAAATT
CGTGATCGGCCTGGCTGAAGAAAATCAAGACAATGCGACAGCGGACTTGT
TTGTCGGATTAATTGAAGAAGTTGAAAAACAAGTGTGGATGCTTTCCTCT
TATTTAGGGTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTACCCTA
AATAAGAGGAAAGCATCCACACTTGTTTTTCAACTTCTTCAATTAATCCG
ACAAACAAGTCCGCTGTCGCATTGTCTTGATTTTCTTCAGCCAGGCCGAT
CACGAATTTAGATTCGCTGCTGATTTGTTTGTAGTCGTTTACCAATGCTT
GTACCATTTCTGATGCTGATGTTTCGTTTCCGCCGTCTGTGATAGATGCA
TGCTCAGTGTATTCTTTCACTGTGGCAACAGGCTGTCCGCCAATCGCCAG
CAGGCGCTCAGCGATGGTATCCACTGTTTCAGCCGCATGGTCATAAAGTT
CTTCAAATTTCTCGTGCAATGTAAAGAAATGAGGCCCTTTCACATACCAA
TGGAAACGGTGGAGCTTAGAGTATAAAAGAAACCAGTTTGATAATTGTGT
GTTCAGTGAATTCTCAACTAATGTTTGATTTGTTTTTGCGTTTTCAGTTT
TCAT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

36
src/prokov/lxpack/tests/aaSt.fasta
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@ -1,36 +0,0 @@
>test
AA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
ATGAAAACTGAAAACGCAAAAACAAATCAAACATTAGTTGAGAATTCACT
GAACACACAATTATCAAACTGGTTTCTTTTATACTCTAAGCTCCACCGTT
TCCATTGGTATGTGAAAGGGCCTCATTTCTTTACATTGCACGAGAAATTT
GAAGAACTTTATGACCATGCGGCTGAAACAGTGGATACCATCGCTGAGCG
CCTGCTGGCGATTGGCGGACAGCCTGTTGCCACAGTGAAAGAATACACTG
AGCATGCATCTATCACAGACGGCGGAAACGAAACATCAGCATCAGAAATG
GTACAAGCATTGGTAAACGACTACAAACAAATCAGCAGCGAATCTAAATT
CGTGATCGGCCTGGCTGAAGAAAATCAAGACAATGCGACAGCGGACTTGT
TTGTCGGATTAATTGAAGAAGTTGAAAAACAAGTGTGGATGCTTTCCTCT
TATTTAGGGTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTACCCTA
AATAAGAGGAAAGCATCCACACTTGTTTTTCAACTTCTTCAATTAATCCG
ACAAACAAGTCCGCTGTCGCATTGTCTTGATTTTCTTCAGCCAGGCCGAT
CACGAATTTAGATTCGCTGCTGATTTGTTTGTAGTCGTTTACCAATGCTT
GTACCATTTCTGATGCTGATGTTTCGTTTCCGCCGTCTGTGATAGATGCA
TGCTCAGTGTATTCTTTCACTGTGGCAACAGGCTGTCCGCCAATCGCCAG
CAGGCGCTCAGCGATGGTATCCACTGTTTCAGCCGCATGGTCATAAAGTT
CTTCAAATTTCTCGTGCAATGTAAAGAAATGAGGCCCTTTCACATACCAA
TGGAAACGGTGGAGCTTAGAGTATAAAAGAAACCAGTTTGATAATTGTGT
GTTCAGTGAATTCTCAACTAATGTTTGATTTGTTTTTGCGTTTTCAGTTT
TCAT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
T

36
src/prokov/lxpack/tests/aaStt.fasta
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@ -1,36 +0,0 @@
>test
AA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
ATGAAAACTGAAAACGCAAAAACAAATCAAACATTAGTTGAGAATTCACT
GAACACACAATTATCAAACTGGTTTCTTTTATACTCTAAGCTCCACCGTT
TCCATTGGTATGTGAAAGGGCCTCATTTCTTTACATTGCACGAGAAATTT
GAAGAACTTTATGACCATGCGGCTGAAACAGTGGATACCATCGCTGAGCG
CCTGCTGGCGATTGGCGGACAGCCTGTTGCCACAGTGAAAGAATACACTG
AGCATGCATCTATCACAGACGGCGGAAACGAAACATCAGCATCAGAAATG
GTACAAGCATTGGTAAACGACTACAAACAAATCAGCAGCGAATCTAAATT
CGTGATCGGCCTGGCTGAAGAAAATCAAGACAATGCGACAGCGGACTTGT
TTGTCGGATTAATTGAAGAAGTTGAAAAACAAGTGTGGATGCTTTCCTCT
TATTTAGGGTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTACCCTA
AATAAGAGGAAAGCATCCACACTTGTTTTTCAACTTCTTCAATTAATCCG
ACAAACAAGTCCGCTGTCGCATTGTCTTGATTTTCTTCAGCCAGGCCGAT
CACGAATTTAGATTCGCTGCTGATTTGTTTGTAGTCGTTTACCAATGCTT
GTACCATTTCTGATGCTGATGTTTCGTTTCCGCCGTCTGTGATAGATGCA
TGCTCAGTGTATTCTTTCACTGTGGCAACAGGCTGTCCGCCAATCGCCAG
CAGGCGCTCAGCGATGGTATCCACTGTTTCAGCCGCATGGTCATAAAGTT
CTTCAAATTTCTCGTGCAATGTAAAGAAATGAGGCCCTTTCACATACCAA
TGGAAACGGTGGAGCTTAGAGTATAAAAGAAACCAGTTTGATAATTGTGT
GTTCAGTGAATTCTCAACTAATGTTTGATTTGTTTTTGCGTTTTCAGTTT
TCAT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TT

BIN
src/repseek/repseek-2014.09.tgz Normal file
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