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call explicitely tcsh to workaround a path bug

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Former-commit-id: e6c05a695a6872dd5fb8acd96ee031844dd21fa0
Former-commit-id: 7740135e0861b796e85fce0c9c62a4793f836c2b
This commit is contained in:
Eric Coissac
2016-04-13 17:32:10 +02:00
parent f466f5505a
commit 536a451510
3 changed files with 5 additions and 4 deletions
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2
detectors/cds/bin/go_cds.sh
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@ -58,7 +58,7 @@ foreach dir ("core" "shell" "dust")
set fams = `ls $DbRoot/$dir/*.fst`
Notify "running pass1:$dir exonerate of $Genome on $DbRoot"
foreach f ($fams)
$PROG_DIR/do_exonerate.sh $Fasta $f $DbRoot/models $temp
tcsh -f $PROG_DIR/do_exonerate.sh $Fasta $f $DbRoot/models $temp
end
endif
end