PhyloSkims/annotate
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call explicitely tcsh to workaround a path bug

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Former-commit-id: e6c05a695a6872dd5fb8acd96ee031844dd21fa0
Former-commit-id: 7740135e0861b796e85fce0c9c62a4793f836c2b
This commit is contained in:
Eric Coissac
2016-04-13 17:32:10 +02:00
parent f466f5505a
commit 536a451510
3 changed files with 5 additions and 4 deletions
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5
org-annotate.sh
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@ -14,6 +14,7 @@
THIS_DIR="$(dirname ${BASH_SOURCE[0]})"
source "${THIS_DIR}/scripts/bash_init.sh"
#
# Management of options
#
@ -95,10 +96,10 @@ pushTmpDir ORG.organnot
loginfo "Done."
loginfo "Annotating the CDS..."
${PROG_DIR}/detectors/cds/bin/go_cds.sh "${RESULTS}.norm.fasta" >> "${RESULTS}.annot"
tcsh -f ${PROG_DIR}/detectors/cds/bin/go_cds.sh "${RESULTS}.norm.fasta" >> "${RESULTS}.annot"
loginfo "Done."
loginfo "Printing minimal header..."
loginfo "Printing minimal header..."
echo "ID XXX; XXX; circular; genomic DNA; XXX; XXX; $(seqlength ${RESULTS}.norm.fasta) BP."
echo "XX"
echo "AC XXX;"