Switch to a swissprot based reference database for CDS annotation

Former-commit-id: 3da31ce8a135394ecac041291134d61f11f06d8f
Former-commit-id: 406f41a7cb2db14ea832480b86f72a11d3b0ab4a
This commit is contained in:
2022-02-16 22:50:17 +01:00
parent 90b3ee9b04
commit 831669433e
644 changed files with 25433 additions and 485597 deletions

View File

@ -142,8 +142,7 @@ function Unk(s) {
}
/^e similarity/ {
split($12, a, "@")
Simil = a[1] ":" a[2]
Simil = a[1] "UniProtKB/Swiss-Prot:" $12
next
}
@ -179,7 +178,7 @@ function Unk(s) {
QQualifier("note","nonfunctional due to a frameshift")
}
QQualifier("product", Product)
QQualifier("inference", "similar to DNA sequence:" Simil)
QQualifier("inference", "similar to " Simil)
# QQualifier("inference", "org.annot -- detect pass:" PassType ":" PassInfo)
if (FrameShift==0) {
if (match(Translat,/\*/)>0) {