Switch to a swissprot based reference database for CDS annotation

Former-commit-id: 3da31ce8a135394ecac041291134d61f11f06d8f
Former-commit-id: 406f41a7cb2db14ea832480b86f72a11d3b0ab4a

detectors/normalize/tools/extract_refLSC.sh

@@ -1,8 +1,13 @@
 #!/bin/bash
 #
 
+# -- CAUTION -- Works as long than the script 
+#               is not called through a symlink
+THIS_DIR="$(dirname ${BASH_SOURCE[0]})"
+source "${THIS_DIR}/../../../scripts/bash_init.sh"
 
-  gawk 'function printfasta(seq) {                                            \
+
+  $AwkCmd 'function printfasta(seq) {                                            \
              seqlen=length(seq);                                             \
              for (i=1; i <= seqlen; i+=60)                                   \
                  print substr(seq,i,60);                                     \