Add a precompiled version of exonerate

Former-commit-id: 41f612c0f642a70a4af11f41c7e41e07f8758b14
Former-commit-id: 6becf83274fa975a004318ed7d5b44fd5a290da8

src/exonerate/Makefile

@@ -2,12 +2,12 @@
 # $Id: $
 # ---------------------------------------------------------------
 # @file: Makefile
-# @desc: makefile for exonerate
+# @desc: makefile for package ebi exonerate
 #
 # @history:
-# @history:
 # @+	    <Gloup> : Apr 97 : Created
 # @+	    <Gloup> : Mar 02 : Updated for LXxware
+# @+	    <EC> : May 2023 : Adapted to ORG.Annot
 #
 # @note: should be processed with gnu compatible make
 # @note: helixware_compatible
@@ -15,14 +15,22 @@
 # @end:
 # ---------------------------------------------------------------
 #
-include ../../config/auto.conf
+#
+# Due to the long compilation time of ncbi blast sources (~1h),
+# the default build actually consists in extracting pre-compiled
+# binaries.
+#
+# To revert to full compilation from sources, then change
+# the following line
 
-DIRS = pkg-config \
+DIRS = binaries
-       libffi \
+
-       gettext \
+# to
-       glib2 \
+# 
-       exonerate
+# DIRS = src
 
 include ../../config/targets/propagate.targ
-
 include ../../config/targets/help.targ
+
+all::
+	@echo "+++++++++++ ebi exonerate package ($(DIRS)) done"

src/exonerate/binaries/Makefile

@@ -0,0 +1,48 @@
+# ---------------------------------------------------------------
+# $Id: $
+# ---------------------------------------------------------------
+# @file: Makefile
+# @desc: makefile for package ncbi blast / binaries
+#
+# @history:
+# @+	    <Gloup> : Sept 15 : Adapted to ORG.Annot
+#
+# @note: should be processed with gnu compatible make
+# @note: helixware_compatible
+#
+# @end:
+# ---------------------------------------------------------------
+#
+include ../../../config/auto.conf
+
+PKG = exonerate-2.2.0
+
+PKGTAR = $(PKG)-$(PORTNAME).tar.gz
+
+PKGDIR = bin-$(PORTNAME)
+
+PROGS = exonerate
+
+BINPATH = $(abspath $(BINDIR))
+
+include $(CFGDIR)targets/empty.targ
+include $(CFGDIR)targets/help.targ
+
+.PHONY: extract install
+
+all:: install
+
+extract:
+	test -d $(PKGDIR) || mkdir $(PKGDIR)
+	test -d $(PKGDIR)/bin || $(TAR) zxf $(PKGTAR) -C $(PKGDIR) --strip-components 1
+	
+install: extract
+	test -d $(BINDIR) || mkdir $(BINDIR)
+	cd $(PKGDIR)/bin && \cp -f $(PROGS) $(BINPATH)
+
+clean::
+	(! test -d $(PKGDIR)) || \rm -r $(PKGDIR)
+
+portclean::
+	cd $(BINDIR) && \rm -f $(PROGS)
+

src/exonerate/src/Makefile

@@ -0,0 +1,28 @@
+# ---------------------------------------------------------------
+# $Id: $
+# ---------------------------------------------------------------
+# @file: Makefile
+# @desc: makefile for exonerate
+#
+# @history:
+# @history:
+# @+	    <Gloup> : Apr 97 : Created
+# @+	    <Gloup> : Mar 02 : Updated for LXxware
+#
+# @note: should be processed with gnu compatible make
+# @note: helixware_compatible
+#
+# @end:
+# ---------------------------------------------------------------
+#
+include ../../config/auto.conf
+
+DIRS = pkg-config \
+       libffi \
+       gettext \
+       glib2 \
+       exonerate
+
+include ../../config/targets/propagate.targ
+
+include ../../config/targets/help.targ