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Change some parameters in program calls

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Former-commit-id: 3ed8760844007def1d8c5a9cf4eaee01d571fe0b
Former-commit-id: b15127c8f8a601b33e09daccc645cbb8a1f23a2e
This commit is contained in:
Eric Coissac
2016-10-06 12:37:57 -03:00
parent 4992483b80
commit 87453701b7
2 changed files with 2 additions and 1 deletions
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2
detectors/cds/bin/do_exonerate.csh
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@ -167,7 +167,7 @@ exonerate \
--refine region \ --refine region \
--refineboundary 5000 \ --refineboundary 5000 \
--singlepass FALSE \ --singlepass FALSE \
--dpmemory 128 \ --dpmemory 1024 \
$DbFile $GenoFile > $base.exo.raw $DbFile $GenoFile > $base.exo.raw
CheckAbort 20 "exonerate failure" CheckAbort 20 "exonerate failure"

1
detectors/cds/lib/filterbx.awk
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@ -7,6 +7,7 @@ BEGIN {
if (IDMIN == "") IDMIN = 80 if (IDMIN == "") IDMIN = 80
if (NBMIN == "") NBMIN = 50 if (NBMIN == "") NBMIN = 50
if (NBMAX == "") NBMAX = 200 if (NBMAX == "") NBMAX = 200
if (COMIN == "") COMIN = 0.8
} }
/^#/ { next } /^#/ { next }