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CDS detector added

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Former-commit-id: 93fac7a70052d06c2a12bf8af59820c653edd31b
Former-commit-id: 0869fdad0f550941a0f78f1e4c57f4fcdb3f6076
This commit is contained in:
alain viari
2015-11-08 14:28:05 +01:00
parent 50d5458bc1
commit 8dab2d56b2
648 changed files with 290109 additions and 543 deletions
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18
detectors/rrna/test/go_test.sh Executable file
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#!/bin/csh -f
echo "+ [testing rRNA]"
../bin/go_rrna.sh test.fst > test.bak
diff -q test.bak test.ref >& /dev/null
set stat = $status
if ($stat == 0) then
echo '+ rRNA test Ok'
\rm -r test.bak
else
echo '+ rRNA test Failure'
endif
exit $stat

1111
detectors/rrna/test/test.fst Normal file
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detectors/rrna/test/test.ref Normal file
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FT rRNA 1969..3468
FT /gene="rrn16S"
FT /product="16S ribosomal RNA"
FT rRNA complement(37878..39377)
FT /gene="rrn16S"
FT /product="16S ribosomal RNA"
FT rRNA 5664..8473
FT /gene="rrn23S"
FT /product="23S ribosomal RNA"
FT rRNA complement(32873..35682)
FT /gene="rrn23S"
FT /product="23S ribosomal RNA"
FT rRNA 8575..8677
FT /gene="rrn4.5S"
FT /product="4.5S ribosomal RNA"
FT rRNA complement(32669..32771)
FT /gene="rrn4.5S"
FT /product="4.5S ribosomal RNA"
FT rRNA 8934..9054
FT /gene="rrn5S"
FT /product="5S ribosomal RNA"
FT rRNA complement(32292..32412)
FT /gene="rrn5S"
FT /product="5S ribosomal RNA"