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CDS detector added

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Former-commit-id: 93fac7a70052d06c2a12bf8af59820c653edd31b
Former-commit-id: 0869fdad0f550941a0f78f1e4c57f4fcdb3f6076
This commit is contained in:
alain viari
2015-11-08 14:28:05 +01:00
parent 50d5458bc1
commit 8dab2d56b2
648 changed files with 290109 additions and 543 deletions
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18
detectors/trna/test/go_test.sh Executable file
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#!/bin/csh -f
echo "+ [testing tRNA]"
../bin/go_trna.sh test.fst > test.bak
diff -q test.bak test.ref >& /dev/null
set stat = $status
if ($stat == 0) then
echo '+ tRNA test Ok'
\rm -r test.bak
else
echo '+ tRNA test Failure'
endif
exit $stat

1111
detectors/trna/test/test.fst Normal file
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detectors/trna/test/test.ref Normal file
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FT tRNA 1670..1741
FT /gene="trnV"
FT /anticodon="GAC"
FT /product="tRNA-Val(GAC)"
FT tRNA join(3769..3767,3802..4562)
FT /gene="trnE"
FT /anticodon="UUC"
FT /product="tRNA-Glu(UUC)"
FT tRNA join(4627..4625,4665..5510)
FT /gene="trnA"
FT /anticodon="UGC"
FT /product="tRNA-Ala(UGC)"
FT tRNA 9317..9391
FT /gene="trnR"
FT /anticodon="ACG"
FT /product="tRNA-Arg(ACG)"
FT tRNA complement(9972..10045)
FT /gene="trnN"
FT /anticodon="GUU"
FT /product="tRNA-Asn(GUU)"
FT tRNA 15583..15662
FT /gene="trnL"
FT /anticodon="UAG"
FT /product="tRNA-Leu(UAG)"
FT tRNA 31301..31374
FT /gene="trnN"
FT /anticodon="GUU"
FT /product="tRNA-Asn(GUU)"
FT tRNA complement(31955..32029)
FT /gene="trnR"
FT /anticodon="ACG"
FT /product="tRNA-Arg(ACG)"
FT tRNA complement(join(35836..35834,35874..36719))
FT /gene="trnA"
FT /anticodon="UGC"
FT /product="tRNA-Ala(UGC)"
FT tRNA complement(join(36784..36782,36817..37577))
FT /gene="trnE"
FT /anticodon="UUC"
FT /product="tRNA-Glu(UUC)"
FT tRNA complement(39605..39676)
FT /gene="trnV"
FT /anticodon="GAC"
FT /product="tRNA-Val(GAC)"
FT tRNA 45660..45742
FT /gene="trnL"
FT /anticodon="CAA"
FT /product="tRNA-Leu(CAA)"
FT tRNA 53278..53352
FT /gene="trnI"
FT /anticodon="CAU"
FT /product="tRNA-Ile(CAU)"