PhyloSkims/annotate
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Patch RPS12 detection

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This commit is contained in:
Eric Coissac
2025-05-25 10:31:30 +02:00
parent c5b92799b1
commit 9205fd1ed1
4 changed files with 16 additions and 5 deletions
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3
org-annotate.sh
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@ -441,6 +441,7 @@ do
shift
done
loginfo "Locus tag prefix provided: $tagprefix"
loginfo "Locus tag numbered from..: $locusshift"
loginfo "NCBI taxid provided......: $taxid"
@ -572,7 +573,7 @@ pushTmpDir ORG.organnot
cdsdetection_pass1=$cdsdetection_pass1 \
cdsdetection_pass2=$cdsdetection_pass2 \
cdsdetection_pass3=$cdsdetection_pass3 \
${PROG_DIR}/detectors/cds/bin/go_cds.sh "${RESULTS}.norm.fasta" >> "${RESULTS}.annot"
${PROG_DIR}/detectors/cds/bin/go_cds.sh "${RESULTS}.norm.fasta" "$sl" >> "${RESULTS}.annot"
loginfo "Done."
fi