PhyloSkims/annotate
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enforce the annotation of full-length rrna genes only

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Former-commit-id: 0669e643dea2391c8370246cd3182b6328c068dc
Former-commit-id: 7820b800405b2134f2f0c2e27c4ef1ec73e1dc0d
This commit is contained in:
Eric Coissac
2015-10-12 07:26:18 -03:00
parent 01c5880ace
commit 921682f75a
1 changed files with 3 additions and 2 deletions
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5
detectors/rrna/bin/go_rrna.sh
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@ -44,11 +44,12 @@ pushTmpDir ORG.rrna
{loc=$5".."$6} \ {loc=$5".."$6} \
($1 ~ /_RC$/) { \ ($1 ~ /_RC$/) { \
loc="complement("loc")"} \ loc="complement("loc")"} \
{match($1,"_..*S");\ (full==1) {match($1,"_..*S");\
rrna=substr($1,RSTART+1,RLENGTH-1);\ rrna=substr($1,RSTART+1,RLENGTH-1);\
print "FT rRNA " loc; \ print "FT rRNA " loc; \
print "FT /gene=\"rrn"rrna"\"" print "FT /gene=\"rrn"rrna"\""
print "FT /product=\""rrna" ribosomal RNA\""\ print "FT /product=\""rrna" ribosomal RNA\"";\
full=0
}' }'
popTmpDir popTmpDir