PhyloSkims/annotate
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Patch a serious bug in the embl formating of the sequence leading to

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frameshifts in the embl formated sequences

Former-commit-id: 92d73a91a2486e59809fef0cff0060b14b47be70
Former-commit-id: a034fb4a42dafca46f491d5e7cfe08de8b2eea92
This commit is contained in:
Eric Coissac
2016-10-12 12:25:31 -03:00
parent 1ac0af03c2
commit 96b5993693
1 changed files with 1 additions and 1 deletions
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2
org-annotate.sh
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@ -303,7 +303,7 @@ pushTmpDir ORG.organnot
gsub(" ","",seq); \ gsub(" ","",seq); \
printf(" ") ;\ printf(" ") ;\
for (i=0; i < 6; i++) { \ for (i=0; i < 6; i++) { \
f=substr(seq,i * 10, 10); \ f=substr(seq,i * 10 + 1, 10); \
pos+=length(f); \ pos+=length(f); \
f = f substr(" ",1,10-length(f)); \ f = f substr(" ",1,10-length(f)); \
printf("%s ",f) \ printf("%s ",f) \