Correction of go_rps12 for not passing anymore the sequence as a variable

Former-commit-id: 0f9bb9472a53aa16a91a9cab5106ee66ee781c34
Former-commit-id: 016607c59e62105850d1d25f29bfe214943abc5c
This commit is contained in:
2023-05-16 13:39:01 +02:00
parent 785e0a6226
commit bf27de1528
2 changed files with 33 additions and 3 deletions

View File

@ -118,10 +118,9 @@ blastx \
| $AwkCmd -f $LIB_DIR/rps12_filter_2.awk \
| $AwkCmd -v delta="$DELTA" \
-v seqlen="$SEQLEN" \
-v chloro="$SEQUENCE" \
-v chloro="${QUERY}" \
-f $LIB_DIR/rps12_filter_3.awk
nrps12=$(ls -1 rps12_fragments_*.fasta | wc -l)
if (( nrps12 > 1 )) ; then