PhyloSkims/annotate
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First version of the tRNA detector and of the global organnot.sh script

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Former-commit-id: f2a75cf99b24875c90c426c2afb22a75b972bf60
Former-commit-id: 65e3dfb35df06ca69bb29b690c9a40e8940ac6bf
This commit is contained in:
Eric Coissac
2015-10-11 10:39:59 -03:00
parent 6015339839
commit c32f7cdde6
9 changed files with 175 additions and 133 deletions
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2
detectors/normalize/bin/go_normalize.sh
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@ -27,12 +27,14 @@
SCRIPT_DIR="$(dirname ${BASH_SOURCE[0]})"
source ${SCRIPT_DIR}/../lib/lookforIR.lib.sh
ORG_DEBUG=1
pushTmpDir ORG.normalize
tmpfasta1="tmp_$$_1.fasta"
tmpfasta2="tmp_$$_2.fasta"
logdebug "Running on : $QUERY"
loginfo "Computing the genome size..."
genome_length=$(seqlength $QUERY)