Add reference databases for LSC and SSC
Former-commit-id: 0feda4b763d819be5e766c713a86521ed7f652d3 Former-commit-id: f572455b22da41b6b15e3e21a2aac5dd1c2360ce
This commit is contained in:
BIN
data/ir/.DS_Store
vendored
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BIN
data/ir/.DS_Store
vendored
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56213
data/ir/LSC_RefDB.fasta
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56213
data/ir/LSC_RefDB.fasta
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File diff suppressed because it is too large
Load Diff
BIN
data/ir/LSC_RefDB.nhr
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BIN
data/ir/LSC_RefDB.nhr
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Binary file not shown.
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data/ir/LSC_RefDB.nin
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BIN
data/ir/LSC_RefDB.nin
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BIN
data/ir/LSC_RefDB.nsq
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BIN
data/ir/LSC_RefDB.nsq
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Binary file not shown.
923
data/ir/LSC_RefDB.tgf
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923
data/ir/LSC_RefDB.tgf
Normal file
@ -0,0 +1,923 @@
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LSC_NC_002693 LSC_NC_007499 1
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LSC_NC_002693 LSC_NC_008336 1
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LSC_NC_002693 LSC_NC_009962 1
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LSC_NC_002693 LSC_NC_010093 1
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LSC_NC_002693 LSC_NC_010109 1
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LSC_NC_002693 LSC_NC_010358 1
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LSC_NC_002693 LSC_NC_010360 1
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LSC_NC_002693 LSC_NC_010361 1
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LSC_NC_002693 LSC_NC_010362 1
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LSC_NC_002693 LSC_NC_015891 1
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LSC_NC_002693 LSC_NC_015894 1
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LSC_NC_002693 LSC_NC_015899 1
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LSC_NC_002693 LSC_NC_016753 1
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LSC_NC_002693 LSC_NC_017609 1
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LSC_NC_002693 LSC_NC_018552 1
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LSC_NC_002693 LSC_NC_021425 1
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LSC_NC_002693 LSC_NC_021426 1
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LSC_NC_002693 LSC_NC_021429 1
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LSC_NC_002693 LSC_NC_021430 1
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LSC_NC_002693 LSC_NC_021431 1
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LSC_NC_002693 LSC_NC_021432 1
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LSC_NC_002693 LSC_NC_021433 1
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LSC_NC_002693 LSC_NC_024542 1
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LSC_NC_002693 LSC_NC_024544 1
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LSC_NC_002693 LSC_NC_025288 1
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LSC_NC_002693 LSC_NC_025554 1
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LSC_NC_002693 LSC_NC_025593 1
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LSC_NC_002693 LSC_NC_026103 1
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LSC_NC_007499 LSC_NC_008115 1
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LSC_NC_007499 LSC_NC_008335 1
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LSC_NC_007499 LSC_NC_008336 1
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LSC_NC_007499 LSC_NC_009962 1
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LSC_NC_007499 LSC_NC_010093 1
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LSC_NC_007499 LSC_NC_010109 1
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LSC_NC_007499 LSC_NC_010323 1
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LSC_NC_007499 LSC_NC_010358 1
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LSC_NC_007499 LSC_NC_010360 1
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LSC_NC_007499 LSC_NC_010361 1
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LSC_NC_007499 LSC_NC_010362 1
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LSC_NC_007499 LSC_NC_014807 1
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LSC_NC_007499 LSC_NC_015605 1
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LSC_NC_007499 LSC_NC_015891 1
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LSC_NC_007499 LSC_NC_015894 1
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LSC_NC_007499 LSC_NC_015899 1
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LSC_NC_007499 LSC_NC_016068 1
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LSC_NC_007499 LSC_NC_016753 1
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LSC_NC_007499 LSC_NC_017609 1
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LSC_NC_007499 LSC_NC_018552 1
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LSC_NC_007499 LSC_NC_021425 1
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LSC_NC_007499 LSC_NC_021426 1
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LSC_NC_007499 LSC_NC_021429 1
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LSC_NC_007499 LSC_NC_021430 1
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LSC_NC_007499 LSC_NC_021431 1
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LSC_NC_007499 LSC_NC_021432 1
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LSC_NC_007499 LSC_NC_021433 1
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LSC_NC_007499 LSC_NC_022264 1
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LSC_NC_007499 LSC_NC_022459 1
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LSC_NC_007499 LSC_NC_022460 1
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LSC_NC_007499 LSC_NC_022461 1
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LSC_NC_007499 LSC_NC_022462 1
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LSC_NC_007499 LSC_NC_022463 1
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LSC_NC_007499 LSC_NC_024292 1
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LSC_NC_007499 LSC_NC_024541 1
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LSC_NC_007499 LSC_NC_024542 1
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LSC_NC_007499 LSC_NC_024543 1
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LSC_NC_007499 LSC_NC_024544 1
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LSC_NC_007499 LSC_NC_024545 1
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LSC_NC_007499 LSC_NC_025288 1
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LSC_NC_007499 LSC_NC_025554 1
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LSC_NC_007499 LSC_NC_025593 1
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LSC_NC_007499 LSC_NC_026103 1
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LSC_NC_008115 LSC_NC_008335 1
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LSC_NC_008115 LSC_NC_008336 1
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LSC_NC_008115 LSC_NC_009962 1
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LSC_NC_008115 LSC_NC_010093 1
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LSC_NC_008115 LSC_NC_010109 1
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LSC_NC_008115 LSC_NC_010323 1
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LSC_NC_008115 LSC_NC_010360 1
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LSC_NC_008115 LSC_NC_010362 1
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LSC_NC_008115 LSC_NC_014807 1
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LSC_NC_008115 LSC_NC_015605 1
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LSC_NC_008115 LSC_NC_015891 1
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LSC_NC_008115 LSC_NC_015894 1
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LSC_NC_008115 LSC_NC_015899 1
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LSC_NC_008115 LSC_NC_016068 1
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LSC_NC_008115 LSC_NC_016753 1
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LSC_NC_008115 LSC_NC_017609 1
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LSC_NC_008115 LSC_NC_018552 1
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LSC_NC_008115 LSC_NC_021425 1
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LSC_NC_008115 LSC_NC_021426 1
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LSC_NC_008115 LSC_NC_021429 1
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LSC_NC_008115 LSC_NC_021430 1
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LSC_NC_008115 LSC_NC_021431 1
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LSC_NC_008115 LSC_NC_021432 1
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LSC_NC_008115 LSC_NC_021433 1
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LSC_NC_008115 LSC_NC_022264 1
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LSC_NC_008115 LSC_NC_022459 1
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LSC_NC_008115 LSC_NC_022460 1
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LSC_NC_008115 LSC_NC_022461 1
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LSC_NC_008115 LSC_NC_022462 1
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LSC_NC_008115 LSC_NC_022463 1
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LSC_NC_008115 LSC_NC_024292 1
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LSC_NC_008115 LSC_NC_024541 1
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LSC_NC_008115 LSC_NC_024542 1
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LSC_NC_008115 LSC_NC_024543 1
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LSC_NC_008115 LSC_NC_024544 1
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LSC_NC_008115 LSC_NC_024545 1
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LSC_NC_008115 LSC_NC_025288 1
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LSC_NC_008115 LSC_NC_025554 1
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LSC_NC_008115 LSC_NC_025593 1
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LSC_NC_008115 LSC_NC_026103 1
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LSC_NC_008335 LSC_NC_008336 1
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LSC_NC_008335 LSC_NC_009962 1
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LSC_NC_008335 LSC_NC_010093 1
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LSC_NC_008335 LSC_NC_010109 1
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LSC_NC_008335 LSC_NC_010323 1
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LSC_NC_008335 LSC_NC_014807 1
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LSC_NC_008335 LSC_NC_015605 1
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LSC_NC_008335 LSC_NC_015891 1
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LSC_NC_008335 LSC_NC_015894 1
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LSC_NC_008335 LSC_NC_015899 1
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LSC_NC_008335 LSC_NC_016068 1
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LSC_NC_008335 LSC_NC_016753 1
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LSC_NC_008335 LSC_NC_017609 1
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LSC_NC_008335 LSC_NC_018552 1
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LSC_NC_008335 LSC_NC_021425 1
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LSC_NC_008335 LSC_NC_021426 1
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LSC_NC_008335 LSC_NC_021429 1
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LSC_NC_008335 LSC_NC_021430 1
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LSC_NC_008335 LSC_NC_021431 1
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LSC_NC_008335 LSC_NC_021432 1
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LSC_NC_008335 LSC_NC_021433 1
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LSC_NC_008335 LSC_NC_022264 1
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LSC_NC_008335 LSC_NC_022459 1
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LSC_NC_008335 LSC_NC_022460 1
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LSC_NC_008335 LSC_NC_022461 1
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LSC_NC_008335 LSC_NC_022462 1
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LSC_NC_008335 LSC_NC_022463 1
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LSC_NC_008335 LSC_NC_024292 1
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LSC_NC_008335 LSC_NC_024541 1
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LSC_NC_008335 LSC_NC_024542 1
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LSC_NC_008335 LSC_NC_024543 1
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LSC_NC_008335 LSC_NC_024544 1
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LSC_NC_008335 LSC_NC_024545 1
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LSC_NC_008335 LSC_NC_025288 1
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LSC_NC_008335 LSC_NC_025554 1
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LSC_NC_008335 LSC_NC_025593 1
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LSC_NC_008335 LSC_NC_026103 1
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LSC_NC_008336 LSC_NC_009962 1
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LSC_NC_008336 LSC_NC_010093 1
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LSC_NC_008336 LSC_NC_010109 1
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LSC_NC_008336 LSC_NC_010323 1
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LSC_NC_008336 LSC_NC_010358 1
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LSC_NC_008336 LSC_NC_010360 1
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LSC_NC_008336 LSC_NC_010361 1
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LSC_NC_008336 LSC_NC_010362 1
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LSC_NC_008336 LSC_NC_014807 1
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LSC_NC_008336 LSC_NC_015605 1
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LSC_NC_008336 LSC_NC_015891 1
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LSC_NC_008336 LSC_NC_015894 1
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LSC_NC_008336 LSC_NC_015899 1
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LSC_NC_008336 LSC_NC_016068 1
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LSC_NC_008336 LSC_NC_016753 1
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LSC_NC_008336 LSC_NC_017609 1
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LSC_NC_008336 LSC_NC_018552 1
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LSC_NC_008336 LSC_NC_021425 1
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LSC_NC_008336 LSC_NC_021426 1
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LSC_NC_008336 LSC_NC_021429 1
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LSC_NC_008336 LSC_NC_021430 1
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LSC_NC_008336 LSC_NC_021431 1
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LSC_NC_008336 LSC_NC_021432 1
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LSC_NC_008336 LSC_NC_021433 1
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LSC_NC_008336 LSC_NC_022264 1
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LSC_NC_008336 LSC_NC_022459 1
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LSC_NC_008336 LSC_NC_022460 1
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LSC_NC_008336 LSC_NC_022461 1
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LSC_NC_008336 LSC_NC_022462 1
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LSC_NC_008336 LSC_NC_022463 1
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LSC_NC_008336 LSC_NC_024292 1
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LSC_NC_008336 LSC_NC_024541 1
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LSC_NC_008336 LSC_NC_024542 1
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LSC_NC_008336 LSC_NC_024543 1
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LSC_NC_008336 LSC_NC_024544 1
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LSC_NC_008336 LSC_NC_024545 1
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LSC_NC_008336 LSC_NC_025288 1
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LSC_NC_008336 LSC_NC_025554 1
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LSC_NC_008336 LSC_NC_025593 1
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LSC_NC_008336 LSC_NC_026103 1
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LSC_NC_009962 LSC_NC_010093 1
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LSC_NC_009962 LSC_NC_010109 1
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LSC_NC_009962 LSC_NC_010323 1
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LSC_NC_009962 LSC_NC_010358 1
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LSC_NC_009962 LSC_NC_010360 1
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LSC_NC_009962 LSC_NC_010361 1
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LSC_NC_009962 LSC_NC_010362 1
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LSC_NC_009962 LSC_NC_014807 1
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LSC_NC_009962 LSC_NC_015605 1
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LSC_NC_009962 LSC_NC_015891 1
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LSC_NC_009962 LSC_NC_015894 1
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LSC_NC_009962 LSC_NC_015899 1
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LSC_NC_009962 LSC_NC_016068 1
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LSC_NC_009962 LSC_NC_016753 1
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LSC_NC_009962 LSC_NC_017609 1
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LSC_NC_009962 LSC_NC_018552 1
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LSC_NC_009962 LSC_NC_021425 1
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LSC_NC_009962 LSC_NC_021426 1
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LSC_NC_009962 LSC_NC_021429 1
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LSC_NC_009962 LSC_NC_021430 1
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LSC_NC_009962 LSC_NC_021431 1
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LSC_NC_009962 LSC_NC_021432 1
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LSC_NC_009962 LSC_NC_021433 1
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LSC_NC_009962 LSC_NC_022264 1
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LSC_NC_009962 LSC_NC_022459 1
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LSC_NC_009962 LSC_NC_022460 1
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LSC_NC_009962 LSC_NC_022461 1
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LSC_NC_009962 LSC_NC_022462 1
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LSC_NC_009962 LSC_NC_022463 1
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LSC_NC_009962 LSC_NC_024292 1
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LSC_NC_009962 LSC_NC_024541 1
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LSC_NC_009962 LSC_NC_024542 1
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LSC_NC_009962 LSC_NC_024543 1
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LSC_NC_009962 LSC_NC_024544 1
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LSC_NC_009962 LSC_NC_024545 1
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LSC_NC_009962 LSC_NC_025288 1
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LSC_NC_009962 LSC_NC_025554 1
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LSC_NC_009962 LSC_NC_025593 1
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LSC_NC_009962 LSC_NC_026103 1
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LSC_NC_010093 LSC_NC_010109 1
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LSC_NC_010093 LSC_NC_010323 1
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LSC_NC_010093 LSC_NC_010358 1
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LSC_NC_010093 LSC_NC_010360 1
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LSC_NC_010093 LSC_NC_010361 1
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LSC_NC_010093 LSC_NC_010362 1
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LSC_NC_010093 LSC_NC_014807 1
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LSC_NC_010093 LSC_NC_015605 1
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LSC_NC_010093 LSC_NC_015891 1
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LSC_NC_010093 LSC_NC_015894 1
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LSC_NC_010093 LSC_NC_015899 1
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LSC_NC_010093 LSC_NC_016068 1
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LSC_NC_010093 LSC_NC_016753 1
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LSC_NC_010093 LSC_NC_017609 1
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LSC_NC_010093 LSC_NC_018552 1
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LSC_NC_010093 LSC_NC_021425 1
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LSC_NC_010093 LSC_NC_021426 1
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LSC_NC_010093 LSC_NC_021429 1
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LSC_NC_010093 LSC_NC_021430 1
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LSC_NC_010093 LSC_NC_021431 1
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LSC_NC_010093 LSC_NC_021432 1
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LSC_NC_010093 LSC_NC_021433 1
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LSC_NC_010093 LSC_NC_022264 1
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LSC_NC_010093 LSC_NC_022459 1
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LSC_NC_010093 LSC_NC_022460 1
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LSC_NC_010093 LSC_NC_022461 1
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LSC_NC_010093 LSC_NC_022462 1
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LSC_NC_010093 LSC_NC_022463 1
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LSC_NC_010093 LSC_NC_024292 1
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LSC_NC_010093 LSC_NC_024541 1
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LSC_NC_010093 LSC_NC_024542 1
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LSC_NC_010093 LSC_NC_024543 1
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LSC_NC_010093 LSC_NC_024544 1
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LSC_NC_010093 LSC_NC_024545 1
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LSC_NC_010093 LSC_NC_025288 1
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LSC_NC_010093 LSC_NC_025554 1
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LSC_NC_010093 LSC_NC_025593 1
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LSC_NC_010093 LSC_NC_026103 1
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LSC_NC_010109 LSC_NC_010323 1
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LSC_NC_010109 LSC_NC_010358 1
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LSC_NC_010109 LSC_NC_010360 1
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LSC_NC_010109 LSC_NC_010361 1
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LSC_NC_010109 LSC_NC_010362 1
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LSC_NC_010109 LSC_NC_014807 1
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LSC_NC_010109 LSC_NC_015605 1
|
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LSC_NC_010109 LSC_NC_015891 1
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LSC_NC_010109 LSC_NC_015894 1
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LSC_NC_010109 LSC_NC_015899 1
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LSC_NC_010109 LSC_NC_016068 1
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LSC_NC_010109 LSC_NC_016753 1
|
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LSC_NC_010109 LSC_NC_017609 1
|
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LSC_NC_010109 LSC_NC_018552 1
|
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LSC_NC_010109 LSC_NC_021425 1
|
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LSC_NC_010109 LSC_NC_021426 1
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LSC_NC_010109 LSC_NC_021429 1
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LSC_NC_010109 LSC_NC_021430 1
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LSC_NC_010109 LSC_NC_021431 1
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LSC_NC_010109 LSC_NC_021432 1
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LSC_NC_010109 LSC_NC_021433 1
|
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LSC_NC_010109 LSC_NC_022264 1
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LSC_NC_010109 LSC_NC_022459 1
|
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LSC_NC_010109 LSC_NC_022460 1
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LSC_NC_010109 LSC_NC_022461 1
|
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LSC_NC_010109 LSC_NC_022462 1
|
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LSC_NC_010109 LSC_NC_022463 1
|
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LSC_NC_010109 LSC_NC_024292 1
|
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LSC_NC_010109 LSC_NC_024541 1
|
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LSC_NC_010109 LSC_NC_024542 1
|
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LSC_NC_010109 LSC_NC_024543 1
|
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LSC_NC_010109 LSC_NC_024544 1
|
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LSC_NC_010109 LSC_NC_024545 1
|
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LSC_NC_010109 LSC_NC_025288 1
|
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LSC_NC_010109 LSC_NC_025554 1
|
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LSC_NC_010109 LSC_NC_025593 1
|
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LSC_NC_010109 LSC_NC_026103 1
|
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LSC_NC_010323 LSC_NC_010358 1
|
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LSC_NC_010323 LSC_NC_010360 1
|
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LSC_NC_010323 LSC_NC_010361 1
|
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LSC_NC_010323 LSC_NC_010362 1
|
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LSC_NC_010323 LSC_NC_014807 1
|
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LSC_NC_010323 LSC_NC_015605 1
|
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LSC_NC_010323 LSC_NC_015891 1
|
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LSC_NC_010323 LSC_NC_015894 1
|
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LSC_NC_010323 LSC_NC_015899 1
|
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LSC_NC_010323 LSC_NC_016068 1
|
||||
LSC_NC_010323 LSC_NC_016753 1
|
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LSC_NC_010323 LSC_NC_017609 1
|
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LSC_NC_010323 LSC_NC_018552 1
|
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|
||||
LSC_NC_017609 LSC_NC_025593 1
|
||||
LSC_NC_017609 LSC_NC_026103 1
|
||||
LSC_NC_018552 LSC_NC_021425 1
|
||||
LSC_NC_018552 LSC_NC_021426 1
|
||||
LSC_NC_018552 LSC_NC_021429 1
|
||||
LSC_NC_018552 LSC_NC_021430 1
|
||||
LSC_NC_018552 LSC_NC_021431 1
|
||||
LSC_NC_018552 LSC_NC_021432 1
|
||||
LSC_NC_018552 LSC_NC_021433 1
|
||||
LSC_NC_018552 LSC_NC_022264 1
|
||||
LSC_NC_018552 LSC_NC_022459 1
|
||||
LSC_NC_018552 LSC_NC_022460 1
|
||||
LSC_NC_018552 LSC_NC_022461 1
|
||||
LSC_NC_018552 LSC_NC_022462 1
|
||||
LSC_NC_018552 LSC_NC_022463 1
|
||||
LSC_NC_018552 LSC_NC_024292 1
|
||||
LSC_NC_018552 LSC_NC_024541 1
|
||||
LSC_NC_018552 LSC_NC_024542 1
|
||||
LSC_NC_018552 LSC_NC_024543 1
|
||||
LSC_NC_018552 LSC_NC_024544 1
|
||||
LSC_NC_018552 LSC_NC_024545 1
|
||||
LSC_NC_018552 LSC_NC_025288 1
|
||||
LSC_NC_018552 LSC_NC_025554 1
|
||||
LSC_NC_018552 LSC_NC_025593 1
|
||||
LSC_NC_018552 LSC_NC_026103 1
|
||||
LSC_NC_021425 LSC_NC_021426 1
|
||||
LSC_NC_021425 LSC_NC_021429 1
|
||||
LSC_NC_021425 LSC_NC_021430 1
|
||||
LSC_NC_021425 LSC_NC_021431 1
|
||||
LSC_NC_021425 LSC_NC_021432 1
|
||||
LSC_NC_021425 LSC_NC_021433 1
|
||||
LSC_NC_021425 LSC_NC_022264 1
|
||||
LSC_NC_021425 LSC_NC_022459 1
|
||||
LSC_NC_021425 LSC_NC_022460 1
|
||||
LSC_NC_021425 LSC_NC_022461 1
|
||||
LSC_NC_021425 LSC_NC_022462 1
|
||||
LSC_NC_021425 LSC_NC_022463 1
|
||||
LSC_NC_021425 LSC_NC_024292 1
|
||||
LSC_NC_021425 LSC_NC_024541 1
|
||||
LSC_NC_021425 LSC_NC_024542 1
|
||||
LSC_NC_021425 LSC_NC_024543 1
|
||||
LSC_NC_021425 LSC_NC_024544 1
|
||||
LSC_NC_021425 LSC_NC_024545 1
|
||||
LSC_NC_021425 LSC_NC_025288 1
|
||||
LSC_NC_021425 LSC_NC_025554 1
|
||||
LSC_NC_021425 LSC_NC_025593 1
|
||||
LSC_NC_021425 LSC_NC_026103 1
|
||||
LSC_NC_021426 LSC_NC_021429 1
|
||||
LSC_NC_021426 LSC_NC_021430 1
|
||||
LSC_NC_021426 LSC_NC_021431 1
|
||||
LSC_NC_021426 LSC_NC_021432 1
|
||||
LSC_NC_021426 LSC_NC_021433 1
|
||||
LSC_NC_021426 LSC_NC_022264 1
|
||||
LSC_NC_021426 LSC_NC_022459 1
|
||||
LSC_NC_021426 LSC_NC_022460 1
|
||||
LSC_NC_021426 LSC_NC_022461 1
|
||||
LSC_NC_021426 LSC_NC_022462 1
|
||||
LSC_NC_021426 LSC_NC_022463 1
|
||||
LSC_NC_021426 LSC_NC_024292 1
|
||||
LSC_NC_021426 LSC_NC_024541 1
|
||||
LSC_NC_021426 LSC_NC_024542 1
|
||||
LSC_NC_021426 LSC_NC_024543 1
|
||||
LSC_NC_021426 LSC_NC_024544 1
|
||||
LSC_NC_021426 LSC_NC_024545 1
|
||||
LSC_NC_021426 LSC_NC_025288 1
|
||||
LSC_NC_021426 LSC_NC_025554 1
|
||||
LSC_NC_021426 LSC_NC_025593 1
|
||||
LSC_NC_021426 LSC_NC_026103 1
|
||||
LSC_NC_021429 LSC_NC_021430 1
|
||||
LSC_NC_021429 LSC_NC_021431 1
|
||||
LSC_NC_021429 LSC_NC_021432 1
|
||||
LSC_NC_021429 LSC_NC_021433 1
|
||||
LSC_NC_021429 LSC_NC_022264 1
|
||||
LSC_NC_021429 LSC_NC_022459 1
|
||||
LSC_NC_021429 LSC_NC_022460 1
|
||||
LSC_NC_021429 LSC_NC_022461 1
|
||||
LSC_NC_021429 LSC_NC_022462 1
|
||||
LSC_NC_021429 LSC_NC_022463 1
|
||||
LSC_NC_021429 LSC_NC_024292 1
|
||||
LSC_NC_021429 LSC_NC_024541 1
|
||||
LSC_NC_021429 LSC_NC_024542 1
|
||||
LSC_NC_021429 LSC_NC_024543 1
|
||||
LSC_NC_021429 LSC_NC_024544 1
|
||||
LSC_NC_021429 LSC_NC_024545 1
|
||||
LSC_NC_021429 LSC_NC_025288 1
|
||||
LSC_NC_021429 LSC_NC_025554 1
|
||||
LSC_NC_021429 LSC_NC_025593 1
|
||||
LSC_NC_021429 LSC_NC_026103 1
|
||||
LSC_NC_021430 LSC_NC_021431 1
|
||||
LSC_NC_021430 LSC_NC_021432 1
|
||||
LSC_NC_021430 LSC_NC_021433 1
|
||||
LSC_NC_021430 LSC_NC_022264 1
|
||||
LSC_NC_021430 LSC_NC_022459 1
|
||||
LSC_NC_021430 LSC_NC_022460 1
|
||||
LSC_NC_021430 LSC_NC_022461 1
|
||||
LSC_NC_021430 LSC_NC_022462 1
|
||||
LSC_NC_021430 LSC_NC_022463 1
|
||||
LSC_NC_021430 LSC_NC_024292 1
|
||||
LSC_NC_021430 LSC_NC_024541 1
|
||||
LSC_NC_021430 LSC_NC_024542 1
|
||||
LSC_NC_021430 LSC_NC_024543 1
|
||||
LSC_NC_021430 LSC_NC_024544 1
|
||||
LSC_NC_021430 LSC_NC_024545 1
|
||||
LSC_NC_021430 LSC_NC_025288 1
|
||||
LSC_NC_021430 LSC_NC_025554 1
|
||||
LSC_NC_021430 LSC_NC_025593 1
|
||||
LSC_NC_021430 LSC_NC_026103 1
|
||||
LSC_NC_021431 LSC_NC_021432 1
|
||||
LSC_NC_021431 LSC_NC_021433 1
|
||||
LSC_NC_021431 LSC_NC_022264 1
|
||||
LSC_NC_021431 LSC_NC_022459 1
|
||||
LSC_NC_021431 LSC_NC_022460 1
|
||||
LSC_NC_021431 LSC_NC_022461 1
|
||||
LSC_NC_021431 LSC_NC_022462 1
|
||||
LSC_NC_021431 LSC_NC_022463 1
|
||||
LSC_NC_021431 LSC_NC_024292 1
|
||||
LSC_NC_021431 LSC_NC_024541 1
|
||||
LSC_NC_021431 LSC_NC_024542 1
|
||||
LSC_NC_021431 LSC_NC_024543 1
|
||||
LSC_NC_021431 LSC_NC_024544 1
|
||||
LSC_NC_021431 LSC_NC_024545 1
|
||||
LSC_NC_021431 LSC_NC_025288 1
|
||||
LSC_NC_021431 LSC_NC_025554 1
|
||||
LSC_NC_021431 LSC_NC_025593 1
|
||||
LSC_NC_021431 LSC_NC_026103 1
|
||||
LSC_NC_021432 LSC_NC_021433 1
|
||||
LSC_NC_021432 LSC_NC_022264 1
|
||||
LSC_NC_021432 LSC_NC_022459 1
|
||||
LSC_NC_021432 LSC_NC_022460 1
|
||||
LSC_NC_021432 LSC_NC_022461 1
|
||||
LSC_NC_021432 LSC_NC_022462 1
|
||||
LSC_NC_021432 LSC_NC_022463 1
|
||||
LSC_NC_021432 LSC_NC_024292 1
|
||||
LSC_NC_021432 LSC_NC_024541 1
|
||||
LSC_NC_021432 LSC_NC_024542 1
|
||||
LSC_NC_021432 LSC_NC_024543 1
|
||||
LSC_NC_021432 LSC_NC_024544 1
|
||||
LSC_NC_021432 LSC_NC_024545 1
|
||||
LSC_NC_021432 LSC_NC_025288 1
|
||||
LSC_NC_021432 LSC_NC_025554 1
|
||||
LSC_NC_021432 LSC_NC_025593 1
|
||||
LSC_NC_021432 LSC_NC_026103 1
|
||||
LSC_NC_021433 LSC_NC_022264 1
|
||||
LSC_NC_021433 LSC_NC_022459 1
|
||||
LSC_NC_021433 LSC_NC_022460 1
|
||||
LSC_NC_021433 LSC_NC_022461 1
|
||||
LSC_NC_021433 LSC_NC_022462 1
|
||||
LSC_NC_021433 LSC_NC_022463 1
|
||||
LSC_NC_021433 LSC_NC_024292 1
|
||||
LSC_NC_021433 LSC_NC_024541 1
|
||||
LSC_NC_021433 LSC_NC_024542 1
|
||||
LSC_NC_021433 LSC_NC_024543 1
|
||||
LSC_NC_021433 LSC_NC_024544 1
|
||||
LSC_NC_021433 LSC_NC_024545 1
|
||||
LSC_NC_021433 LSC_NC_025288 1
|
||||
LSC_NC_021433 LSC_NC_025554 1
|
||||
LSC_NC_021433 LSC_NC_025593 1
|
||||
LSC_NC_021433 LSC_NC_026103 1
|
||||
LSC_NC_022264 LSC_NC_022459 1
|
||||
LSC_NC_022264 LSC_NC_022460 1
|
||||
LSC_NC_022264 LSC_NC_022461 1
|
||||
LSC_NC_022264 LSC_NC_022462 1
|
||||
LSC_NC_022264 LSC_NC_022463 1
|
||||
LSC_NC_022264 LSC_NC_024292 1
|
||||
LSC_NC_022264 LSC_NC_024541 1
|
||||
LSC_NC_022264 LSC_NC_024542 1
|
||||
LSC_NC_022264 LSC_NC_024543 1
|
||||
LSC_NC_022264 LSC_NC_024544 1
|
||||
LSC_NC_022264 LSC_NC_024545 1
|
||||
LSC_NC_022264 LSC_NC_025288 1
|
||||
LSC_NC_022264 LSC_NC_025554 1
|
||||
LSC_NC_022264 LSC_NC_025593 1
|
||||
LSC_NC_022264 LSC_NC_026103 1
|
||||
LSC_NC_022459 LSC_NC_022460 1
|
||||
LSC_NC_022459 LSC_NC_022461 1
|
||||
LSC_NC_022459 LSC_NC_022462 1
|
||||
LSC_NC_022459 LSC_NC_022463 1
|
||||
LSC_NC_022459 LSC_NC_024292 1
|
||||
LSC_NC_022459 LSC_NC_024541 1
|
||||
LSC_NC_022459 LSC_NC_024542 1
|
||||
LSC_NC_022459 LSC_NC_024543 1
|
||||
LSC_NC_022459 LSC_NC_024544 1
|
||||
LSC_NC_022459 LSC_NC_024545 1
|
||||
LSC_NC_022459 LSC_NC_025288 1
|
||||
LSC_NC_022459 LSC_NC_025554 1
|
||||
LSC_NC_022459 LSC_NC_025593 1
|
||||
LSC_NC_022459 LSC_NC_026103 1
|
||||
LSC_NC_022460 LSC_NC_022461 1
|
||||
LSC_NC_022460 LSC_NC_022462 1
|
||||
LSC_NC_022460 LSC_NC_022463 1
|
||||
LSC_NC_022460 LSC_NC_024292 1
|
||||
LSC_NC_022460 LSC_NC_024541 1
|
||||
LSC_NC_022460 LSC_NC_024542 1
|
||||
LSC_NC_022460 LSC_NC_024543 1
|
||||
LSC_NC_022460 LSC_NC_024544 1
|
||||
LSC_NC_022460 LSC_NC_024545 1
|
||||
LSC_NC_022460 LSC_NC_025288 1
|
||||
LSC_NC_022460 LSC_NC_025554 1
|
||||
LSC_NC_022460 LSC_NC_025593 1
|
||||
LSC_NC_022460 LSC_NC_026103 1
|
||||
LSC_NC_022461 LSC_NC_022462 1
|
||||
LSC_NC_022461 LSC_NC_022463 1
|
||||
LSC_NC_022461 LSC_NC_024292 1
|
||||
LSC_NC_022461 LSC_NC_024541 1
|
||||
LSC_NC_022461 LSC_NC_024542 1
|
||||
LSC_NC_022461 LSC_NC_024543 1
|
||||
LSC_NC_022461 LSC_NC_024544 1
|
||||
LSC_NC_022461 LSC_NC_024545 1
|
||||
LSC_NC_022461 LSC_NC_025288 1
|
||||
LSC_NC_022461 LSC_NC_025554 1
|
||||
LSC_NC_022461 LSC_NC_025593 1
|
||||
LSC_NC_022461 LSC_NC_026103 1
|
||||
LSC_NC_022462 LSC_NC_022463 1
|
||||
LSC_NC_022462 LSC_NC_024292 1
|
||||
LSC_NC_022462 LSC_NC_024541 1
|
||||
LSC_NC_022462 LSC_NC_024542 1
|
||||
LSC_NC_022462 LSC_NC_024543 1
|
||||
LSC_NC_022462 LSC_NC_024544 1
|
||||
LSC_NC_022462 LSC_NC_024545 1
|
||||
LSC_NC_022462 LSC_NC_025288 1
|
||||
LSC_NC_022462 LSC_NC_025554 1
|
||||
LSC_NC_022462 LSC_NC_025593 1
|
||||
LSC_NC_022462 LSC_NC_026103 1
|
||||
LSC_NC_022463 LSC_NC_024292 1
|
||||
LSC_NC_022463 LSC_NC_024541 1
|
||||
LSC_NC_022463 LSC_NC_024542 1
|
||||
LSC_NC_022463 LSC_NC_024543 1
|
||||
LSC_NC_022463 LSC_NC_024544 1
|
||||
LSC_NC_022463 LSC_NC_024545 1
|
||||
LSC_NC_022463 LSC_NC_025288 1
|
||||
LSC_NC_022463 LSC_NC_025554 1
|
||||
LSC_NC_022463 LSC_NC_025593 1
|
||||
LSC_NC_022463 LSC_NC_026103 1
|
||||
LSC_NC_024292 LSC_NC_024541 1
|
||||
LSC_NC_024292 LSC_NC_024542 1
|
||||
LSC_NC_024292 LSC_NC_024543 1
|
||||
LSC_NC_024292 LSC_NC_024544 1
|
||||
LSC_NC_024292 LSC_NC_024545 1
|
||||
LSC_NC_024292 LSC_NC_025288 1
|
||||
LSC_NC_024292 LSC_NC_025554 1
|
||||
LSC_NC_024292 LSC_NC_025593 1
|
||||
LSC_NC_024292 LSC_NC_026103 1
|
||||
LSC_NC_024541 LSC_NC_024542 1
|
||||
LSC_NC_024541 LSC_NC_024543 1
|
||||
LSC_NC_024541 LSC_NC_024544 1
|
||||
LSC_NC_024541 LSC_NC_024545 1
|
||||
LSC_NC_024541 LSC_NC_025288 1
|
||||
LSC_NC_024541 LSC_NC_025554 1
|
||||
LSC_NC_024541 LSC_NC_025593 1
|
||||
LSC_NC_024541 LSC_NC_026103 1
|
||||
LSC_NC_024542 LSC_NC_024543 1
|
||||
LSC_NC_024542 LSC_NC_024544 1
|
||||
LSC_NC_024542 LSC_NC_024545 1
|
||||
LSC_NC_024542 LSC_NC_025288 1
|
||||
LSC_NC_024542 LSC_NC_025554 1
|
||||
LSC_NC_024542 LSC_NC_025593 1
|
||||
LSC_NC_024542 LSC_NC_026103 1
|
||||
LSC_NC_024543 LSC_NC_024544 1
|
||||
LSC_NC_024543 LSC_NC_024545 1
|
||||
LSC_NC_024543 LSC_NC_025288 1
|
||||
LSC_NC_024543 LSC_NC_025554 1
|
||||
LSC_NC_024543 LSC_NC_025593 1
|
||||
LSC_NC_024543 LSC_NC_026103 1
|
||||
LSC_NC_024544 LSC_NC_024545 1
|
||||
LSC_NC_024544 LSC_NC_025288 1
|
||||
LSC_NC_024544 LSC_NC_025554 1
|
||||
LSC_NC_024544 LSC_NC_025593 1
|
||||
LSC_NC_024544 LSC_NC_026103 1
|
||||
LSC_NC_024545 LSC_NC_025288 1
|
||||
LSC_NC_024545 LSC_NC_025554 1
|
||||
LSC_NC_024545 LSC_NC_025593 1
|
||||
LSC_NC_024545 LSC_NC_026103 1
|
||||
LSC_NC_025288 LSC_NC_025554 1
|
||||
LSC_NC_025288 LSC_NC_025593 1
|
||||
LSC_NC_025288 LSC_NC_026103 1
|
||||
LSC_NC_025554 LSC_NC_025593 1
|
||||
LSC_NC_025554 LSC_NC_026103 1
|
||||
LSC_NC_025593 LSC_NC_026103 1
|
||||
19075
data/ir/SSC_RefDB.fasta
Normal file
19075
data/ir/SSC_RefDB.fasta
Normal file
File diff suppressed because it is too large
Load Diff
BIN
data/ir/SSC_RefDB.nhr
Normal file
BIN
data/ir/SSC_RefDB.nhr
Normal file
Binary file not shown.
BIN
data/ir/SSC_RefDB.nin
Normal file
BIN
data/ir/SSC_RefDB.nin
Normal file
Binary file not shown.
BIN
data/ir/SSC_RefDB.nsq
Normal file
BIN
data/ir/SSC_RefDB.nsq
Normal file
Binary file not shown.
2434
data/ir/SSC_RefDB.tgf
Normal file
2434
data/ir/SSC_RefDB.tgf
Normal file
File diff suppressed because it is too large
Load Diff
63
data/ir/SingleCopyDB.log
Normal file
63
data/ir/SingleCopyDB.log
Normal file
@ -0,0 +1,63 @@
|
||||
2015-10-07 11:25:33 [OA INFO ] 89006 -- Selecting Viridiplantae genebank entries...
|
||||
2015-10-07 11:25:42 [OA INFO ] 89006 -- --> 695 entries selected
|
||||
2015-10-07 11:25:42 [OA INFO ] 89006 -- Done
|
||||
2015-10-07 11:25:42 [OA INFO ] 89006 -- Extracting Long Single Copies (LSC)...
|
||||
2015-10-07 11:26:36 [OA INFO ] 89006 -- --> 64 retreived sequences
|
||||
2015-10-07 11:26:36 [OA INFO ] 89006 -- Done
|
||||
2015-10-07 11:26:36 [OA INFO ] 89006 -- Building LSC coorientation graph...
|
||||
2015-10-07 11:26:36 [OA INFO ] 89127 -- Build temporary blast DB...
|
||||
2015-10-07 11:26:36 [OA INFO ] 89127 -- Done
|
||||
2015-10-07 11:26:36 [OA INFO ] 89127 -- Running Blast...
|
||||
2015-10-07 11:27:47 [OA INFO ] 89127 -- Done
|
||||
2015-10-07 11:27:47 [OA INFO ] 89006 -- --> 6 connected componants
|
||||
2015-10-07 11:27:47 [OA INFO ] 89006 -- Done
|
||||
2015-10-07 11:27:47 [OA INFO ] 89006 -- Indexing LCS...
|
||||
2015-10-07 11:27:47 [OA INFO ] 89006 -- Done
|
||||
2015-10-07 11:27:47 [OA INFO ] 89006 -- Extracting main connected components for LCS...
|
||||
2015-10-07 11:27:48 [OA INFO ] 89006 -- --> 40 sequences
|
||||
2015-10-07 11:27:48 [OA INFO ] 89006 -- Done
|
||||
2015-10-07 11:27:48 [OA INFO ] 89006 -- Extracting second connected components for LCS...
|
||||
2015-10-07 11:27:48 [OA INFO ] 89006 -- --> 5 sequences
|
||||
2015-10-07 11:27:48 [OA INFO ] 89006 -- Done
|
||||
2015-10-07 11:27:48 [OA INFO ] 89006 -- merging both connected components for LCS...
|
||||
2015-10-07 11:27:48 [OA INFO ] 89006 -- --> 45 sequences in total
|
||||
2015-10-07 11:27:48 [OA INFO ] 89006 -- Done
|
||||
2015-10-07 11:27:48 [OA INFO ] 89006 -- Checking LCS homogeneity...
|
||||
2015-10-07 11:27:48 [OA INFO ] 89258 -- Build temporary blast DB...
|
||||
2015-10-07 11:27:48 [OA INFO ] 89258 -- Done
|
||||
2015-10-07 11:27:48 [OA INFO ] 89258 -- Running Blast...
|
||||
2015-10-07 11:28:50 [OA INFO ] 89258 -- Done
|
||||
2015-10-07 11:28:50 [OA INFO ] 89006 -- --> 1 connected componants
|
||||
2015-10-07 11:28:50 [OA INFO ] 89006 -- Done
|
||||
2015-10-07 11:28:50 [OA INFO ] 89006 -- Installing LCS reference databases...
|
||||
2015-10-07 11:28:50 [OA INFO ] 89006 -- Done
|
||||
2015-10-07 11:28:50 [OA INFO ] 89006 -- Extracting Short Single Copies (SSC)...
|
||||
2015-10-07 11:29:42 [OA INFO ] 89006 -- --> 76 retreived sequences
|
||||
2015-10-07 11:29:42 [OA INFO ] 89006 -- Done
|
||||
2015-10-07 11:29:42 [OA INFO ] 89006 -- Building SSC coorientation graph...
|
||||
2015-10-07 11:29:42 [OA INFO ] 89336 -- Build temporary blast DB...
|
||||
2015-10-07 11:29:42 [OA INFO ] 89336 -- Done
|
||||
2015-10-07 11:29:42 [OA INFO ] 89336 -- Running Blast...
|
||||
2015-10-07 11:30:03 [OA INFO ] 89336 -- Done
|
||||
2015-10-07 11:30:03 [OA INFO ] 89006 -- --> 1 connected componants
|
||||
2015-10-07 11:30:03 [OA INFO ] 89006 -- Done
|
||||
2015-10-07 11:30:03 [OA INFO ] 89006 -- Indexing SSC...
|
||||
2015-10-07 11:30:03 [OA INFO ] 89006 -- Done
|
||||
2015-10-07 11:30:03 [OA INFO ] 89006 -- Extracting main connected components for SSC...
|
||||
2015-10-07 11:30:03 [OA INFO ] 89006 -- --> 72 sequences
|
||||
2015-10-07 11:30:03 [OA INFO ] 89006 -- Done
|
||||
2015-10-07 11:30:03 [OA INFO ] 89006 -- Extracting second connected components for SSC...
|
||||
2015-10-07 11:30:03 [OA INFO ] 89006 -- --> 0 sequences
|
||||
2015-10-07 11:30:03 [OA INFO ] 89006 -- Done
|
||||
2015-10-07 11:30:03 [OA INFO ] 89006 -- merging both connected components for SSC...
|
||||
2015-10-07 11:30:03 [OA INFO ] 89006 -- --> 72 sequences in total
|
||||
2015-10-07 11:30:03 [OA INFO ] 89006 -- Done
|
||||
2015-10-07 11:30:03 [OA INFO ] 89006 -- Checking SSC homogeneity...
|
||||
2015-10-07 11:30:03 [OA INFO ] 89497 -- Build temporary blast DB...
|
||||
2015-10-07 11:30:03 [OA INFO ] 89497 -- Done
|
||||
2015-10-07 11:30:03 [OA INFO ] 89497 -- Running Blast...
|
||||
2015-10-07 11:30:23 [OA INFO ] 89497 -- Done
|
||||
2015-10-07 11:30:23 [OA INFO ] 89006 -- --> 1 connected componants
|
||||
2015-10-07 11:30:23 [OA INFO ] 89006 -- Done
|
||||
2015-10-07 11:30:23 [OA INFO ] 89006 -- Installing SSC reference databases...
|
||||
2015-10-07 11:30:23 [OA INFO ] 89006 -- Done
|
||||
Reference in New Issue
Block a user