First commit - second part
Former-commit-id: 202296404e6a70f8ae96db99faffb456104c57e9 Former-commit-id: 118417735d2055683607df9809c9b721cc1b1bab
This commit is contained in:
9453
data/rrna/16S.goodali.aln
Normal file
9453
data/rrna/16S.goodali.aln
Normal file
File diff suppressed because it is too large
Load Diff
9610
data/rrna/16S.goodali.fst
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9610
data/rrna/16S.goodali.fst
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File diff suppressed because it is too large
Load Diff
381
data/rrna/4.5S.goodali.aln
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381
data/rrna/4.5S.goodali.aln
Normal file
@ -0,0 +1,381 @@
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CLUSTAL W (1.7) multiple sequence alignment
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NC_000932_LCS gaaggtcacggcgagacgagccg-------------------------------------
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NC_001320_LCS taaggtagcggcgagacgagccg-------------------------------------
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||||
NC_004677_LCS taaggtcacggcgagacgagccg-------------------------------------
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||||
NC_008115_LCS gaaggtcacggcgagacgagctg-------------------------------------
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||||
NC_006290_LCS gaaggtcacggcgagacgagccg-------------------------------------
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||||
NC_007942_LCS gaaggtcacggcgagacgagccg-------------------------------------
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||||
NC_026134_LCS gaaggtcacggcgagacgagccg-------------------------------------
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||||
NC_011828_LCS gaaggtcacggcgagactagccg-------------------------------------
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||||
NC_009618_LCS taaggtcacggcgagacgagccg-------------------------------------
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||||
NC_002693_LCS gaaggtcacggcgagacgagccg-------------------------------------
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||||
NC_005086_LCS taaggtcacggcgagacgagccg-------------------------------------
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||||
NC_009259_LCS gaaggtcacggcgagacgagccg-------------------------------------
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||||
NC_024021_LCS --aggtcatggcgagacgagccg-------------------------------------
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||||
NC_008335_LCS -aaggtcacggcgagacgagccg-------------------------------------
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||||
NC_026295_LCS --aggtcacggcgagacgagccg-------------------------------------
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||||
NC_016708_LCS gaaggtcacggcgagacgagccg-------------------------------------
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||||
NC_008796_LCS gaaggtcacggcgagacgagccg-------------------------------------
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||||
NC_010442_LCS gaaggtcacggcgagacgagccg-------------------------------------
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||||
NC_021425_LCS gaaggtcacggcgagacgagccg-------------------------------------
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||||
NC_007407_LCS taaggtcacggcgagacgagccg-------------------------------------
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||||
NC_015891_LCS taaggtcacggcaagacgagccg-------------------------------------
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||||
NC_016064_LCS taaggtcacggcgagacgagccg-------------------------------------
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||||
NC_001631_LCS taaggtcacggcgagacgagccg-------------------------------------
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||||
NC_005087_LCS taaggtcacggcaagacgagccg-------------------------------------
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||||
NC_021449_LCS gaaggtcacggcgagacgagccg-------------------------------------
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NC_023119_LCS -aaggtcacggcgagacgagccg-------------------------------------
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||||
NC_023090_LCS gaaggtcacggcgagacgagccg-------------------------------------
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||||
NC_015621_LCS gaaggtcacggcgagacgagccg-------------------------------------
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NC_009271_LCS gaaggtcacggcgagacgagccg-------------------------------------
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NC_003119_LCS gaaggtcacggcgagacgagccg-------------------------------------
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||||
NC_007144_LCS gaaggtcacggcgagatgagccg-------------------------------------
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NC_009766_LCS gaaggtcacggcgagacgagccg-------------------------------------
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NC_025744_LCS -aaggtcacggcgagactagccg-------------------------------------
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NC_001568_LCS taaggtcacggcgagacgagccg-------------------------------------
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||||
NC_009765_LCS gaaggtcacggcgagacgagccg-------------------------------------
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NC_017006_LCS taaggtcacggcaagacgagccg-------------------------------------
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NC_008829_LCS taaggtcacggcaagacgagccg-------------------------------------
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NC_014676_LCS gaaggtcacggcgagacgagccg-------------------------------------
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NC_025236_LCS taaggtagcggcgagacgagccg-------------------------------------
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NC_023533_LCS taaggtagcggcgagacgagccg-------------------------------------
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NC_014062_LCS taaggtagcggcgagacgagccg-------------------------------------
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NC_020321_LCS taaggtcaaggcgagacgagcct-------------------------------------
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NC_012818_LCS taaggtcacggcaagacgagccg-------------------------------------
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||||
NC_022137_LCS taaggtcacggcaagacgagccg-------------------------------------
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||||
NC_014348_LCS taaggtcacggcaagacgagccg-------------------------------------
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||||
NC_024158_LCS taaggtcacggcaagacgagccg-------------------------------------
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||||
NC_014699_LCS taaggtcacggcaagacgagccg-------------------------------------
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NC_010109_LCS taaggtcacggcaagacgagccg-------------------------------------
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||||
NC_014592_LCS taaggtcacggcaagacgagccg-------------------------------------
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NC_014675_LCS taaggtcacggcaagacgagccg-------------------------------------
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||||
NC_024291_LCS taaggtcacggcaagacgagccg-------------------------------------
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||||
NC_019628_LCS taaggtcacggcaagacgagccg-------------------------------------
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||||
NC_020146_LCS taaggtcacggcaagacgagccg-------------------------------------
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||||
NC_015402_LCS taaggtcacggcaagacgagccg-------------------------------------
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NC_004766_LCS taaggtcacggcaagacgagccg-------------------------------------
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||||
NC_012052_LCS taaggtcacggcaagacgagccg-------------------------------------
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NC_001319_LCS taaggtcacggcaagactagccg-------------------------------------
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||||
NC_004543_LCS taaggtcacggcaagatgagccg-------------------------------------
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||||
NC_020259_LCS taaggtcacggcaagatgagccg-------------------------------------
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||||
NC_025659_LCS taaggtcacggcgagacgagcca-------------------------------------
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||||
NC_026775_LCS taaggtcacggcgagacgagccg-------------------------------------
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||||
NC_026773_LCS taaggtcacggcgagacgagccg-------------------------------------
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||||
NC_025305_LCS taaggtcacggcgagacgagccg-------------------------------------
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||||
NC_011954_LCS taaggtcacggcgagacgagccg-------------------------------------
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||||
NC_026301_LCS taaggtcacggcgagacgagccg-------------------------------------
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||||
NC_010654_LCS taaggtcacggcgagacgagccg-------------------------------------
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NC_026778_LCS taaggtcacggcgagacgagccg-------------------------------------
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NC_021936_LCS taaggtcacggcgagacgagccg-------------------------------------
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NC_026776_LCS taaggtcacggcgagacgagccg-------------------------------------
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||||
NC_014056_LCS taaggtcacggcgagacgagccg-------------------------------------
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NC_026449_LCS taaggtcacggcgagacgagccg-------------------------------------
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NC_024945_LCS taaggtcacggcgagatgagccg-------------------------------------
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NC_026785_LCS taaggtcacggctagacgagccg-------------------------------------
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NC_023805_LCS taaggtcacggtgagactagccg-------------------------------------
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NC_024827_LCS taaggtcacggtgagactagccg-------------------------------------
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NC_020365_LCS taaggtcacgtcgagacgagccg-------------------------------------
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NC_010548_LCS taaggtcatggcgagacgagccg-------------------------------------
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||||
NC_013086_LCS tgaggtcacggcaagatgagccg-------------------------------------
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NC_006861_LCS -aaggtcacggcaagacgagccg-------------------------------------
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NC_003386_LCS -aaggtcacggcaagacgagccg-------------------------------------
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NC_016471_LCS -aaggtcacggcgagacgagccg-------------------------------------
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NC_010359_LCS -aaggtcacggcgagacgagccg-------------------------------------
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NC_020372_LCS -aaggtcacggcgagacgagccg-------------------------------------
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NC_014582_LCS -aaggtcacggcgagacgagccg-------------------------------------
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NC_024421_LCS -aaggtcacggcgagacgagccg-------------------------------------
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NC_018114_LCS -aaggtcacggcgagacgagccg-------------------------------------
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NC_026847_LCS -aaggtcacggcgagacgagccg-------------------------------------
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NC_023120_LCS -aaggtcacggtgagactagccg-------------------------------------
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NC_014874_LCS -aaggtcacggttagacgagccg-------------------------------------
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NC_011942_LCS -------------agacgagccg-------------------------------------
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NC_016065_LCS agaggtcttggcgagactagcca-------------------------------------
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NC_022136_LCS caaggtcacggcgagacgagccg-------------------------------------
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NC_014063_LCS caaggtcacggcgagacgagccg-------------------------------------
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NC_023121_LCS -caggtcacggcgagacgagccg-------------------------------------
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NC_021110_LCS cgaggtcacggcgagacgagccg-------------------------------------
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NC_016063_LCS cgaggtcacggcgagacgagccg-------------------------------------
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NC_025642_LCS gaaggtcacggcgagacgagcca-------------------------------------
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NC_026202_LCS gaaggtcacggcgagacgagccg-------------------------------------
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NC_009266_LCS gaaggtcacggcgagacgagccg-------------------------------------
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NC_002202_LCS gaaggtcacggcgagacgagccg-------------------------------------
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NC_025554_LCS gaaggtcacggcgagacgagccg-------------------------------------
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NC_021111_LCS gaaggtcacggcgagacgagccg-------------------------------------
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NC_023359_LCS gaaggtcacggcgagacgagccg-------------------------------------
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NC_010776_LCS gaaggtcacggcgagacgagccg-------------------------------------
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NC_024635_LCS gaaggtcacggcgagacgagccg-------------------------------------
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NC_025907_LCS gaaggtcacggcgagacgagccg-------------------------------------
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NC_008336_LCS gaaggtcacggcgagacgagccg-------------------------------------
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NC_022457_LCS gaaggtcacggcgagacgagccg-------------------------------------
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NC_023259_LCS gaaggtcacggcgagacgagccg-------------------------------------
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NC_025909_LCS gaaggtcacggcgagacgagccg-------------------------------------
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NC_024038_LCS gaaggtcacggcgagacgagccg-------------------------------------
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NC_014057_LCS gaaggtcacggcgagacgagccg-------------------------------------
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NC_002694_LCS gaaggtcacggcgagacgagccg-------------------------------------
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NC_010433_LCS_CMP gaaggtcacggcgagacgagccg-------------------------------------
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NC_001666_LCS_CMP taaggtagcggcgagacgagccg-------------------------------------
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NC_013991_LCS_CMP taaggtcacggcgagacgagccg-------------------------------------
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NC_024168_LCS_CMP --aggtcacggcaagacgagccg-------------------------------------
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NC_023356_LCS_CMP taaggtcacggcgagacgagccg-------------------------------------
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NC_013707_LCS_CMP gaaggtcacggcgagacgagccg-------------------------------------
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NC_021372_LCS taaggtagcggcgagacgagccg-------------------------------------
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NC_007578_LCS gaaggtcacggcgagacgagccg-------------------------------------
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NC_008454_LCS gaaggtcacggcgagacgagccg------------------tttatcatattactcaatt
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NC_014569_LCS gaaggtcacggcgagacgagccgtttgttttagagtgtcaaagtcttgagaattcaggcg
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NC_026448_LCS taaggtcgcggcgagatgatccg-------------------------------------
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NC_000932_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
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NC_001320_LCS ----------ttta----------aataggtgtcaagtggaagtgcagtgatgtatg-ca
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NC_004677_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
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NC_008115_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
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NC_006290_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
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NC_007942_LCS ----------tttctaatt--aatgataggtgtcaagtggaagtgcagtgatgtatg-ca
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NC_026134_LCS ----------tttatcatt--aacgataggtgtcaagtggaagtgcagtgatgtatg-ca
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NC_011828_LCS ----------tttttcatt--aacgataggtgtcaagtggaagtgcagtaatgtatg-ca
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NC_009618_LCS ----------tttatcatc---acgataggtgtcaagtggaagtgcagtgatgcatg-ca
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NC_002693_LCS ----------tttatcatt---atgataggtgtcaagtggaagtgcagtgatgtatg-ca
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NC_005086_LCS ----------tttatcatc---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
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NC_009259_LCS ----------tttctaatt--aatgataggtgtcaagtggaagtgcagtgatgtatg-ca
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NC_024021_LCS ----------ttag--------gtgataggtgtcaagtggaagtgcagtgatgcatg-ca
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NC_008335_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
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NC_026295_LCS ----------ttag--------gtgataggtgtcaagtggaagtgcagtgatgcatg-ca
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NC_016708_LCS ----------tttctcatt--aacgataggtgtcaagtggaagtgcagtgatgtatg-ca
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NC_008796_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
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NC_010442_LCS ----------tttatcatt---acaataggtgtcaagtggaagtgcagtgatgtatg-ca
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NC_021425_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
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NC_007407_LCS ----------tttatcatt---acgataggtgccaagtggaagtgcagtgatgtatg-ca
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NC_015891_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
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NC_016064_LCS ----------tttatcatt---acgataggtgtcaagtggaagtacagtgatgtatg-ca
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NC_001631_LCS ----------tttataatt---atgataggtgtcaagtggaagtgcagtgatgtatg-ca
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NC_005087_LCS ----------tttatcatc---acgataggtgccaagtggaagtgcagtaatgtatg-ca
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NC_021449_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
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NC_023119_LCS ----------tttttcatt---ccgataggtgtcaagtggaagtgcagtgatgtatg-ca
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NC_023090_LCS ----------tttctcatt--aacgataggtgtcaagtggaagtgcagtgatgtatg-ca
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NC_015621_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
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NC_009271_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
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NC_003119_LCS ----------tttttcatt--aacgataggtgtcaagtggaagtgcagtaatgtatg-ca
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NC_007144_LCS ----------tttatcatc---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
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NC_009766_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
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NC_025744_LCS -----------ttttcatt--aacgataggtgtcaagtggaagtgcagtaatgtatg-ca
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NC_001568_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
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NC_009765_LCS ----------tttatcatt---acaataggtgtcaagtggaagtgcagtgatgtatg-ca
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NC_017006_LCS ----------tttatcacc---acgataggtgccaagtggaagtgcagtaatgtatg-ca
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NC_008829_LCS ----------tttatcact---acgataggtgccaagtggaagtgcagtaatgtatg-ca
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NC_014676_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
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NC_025236_LCS ----------ttta----------aataggtgtcaagtggaagtacagtgatgtatg-ca
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NC_023533_LCS ----------ttta----------aataggtgtcaagtggaagtgcagtgatgtatg-ca
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NC_014062_LCS ----------ttta----------aataggtgtcaagtggaagtgcagtgatgtatg-ca
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NC_020321_LCS ----------tttatcaa----acgataggtatcaagtggaagtgcagtgatgtacg-ca
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NC_012818_LCS ----------tttatcacc---acgataggtgccaagtggaggtgcagtaatgtatg-ca
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NC_022137_LCS ----------tttatcacc---acgataggtgccaagtggaggtgcagtgatgcatg-ca
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NC_014348_LCS ----------tttatcact---acgataggtgctaagtggaggtgcagtaatgtatg-ca
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NC_024158_LCS ----------tttatcatc---acgataggtgccaggtggaagtgcagtaatgtatg-ca
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NC_014699_LCS ----------tttatcatt---acgataggtgccaggtggaagtgcagtaatgtatg-ca
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NC_010109_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
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NC_014592_LCS ----------tttatcgcc---acaataggtgctaagtggaggtgcagtaatgtatg-ca
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NC_014675_LCS ----------tttatcgtc---acgataggtgccaagtggaagtgcagtaatgcatg-ca
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NC_024291_LCS ----------tttatgatc---acgataggtgccaagtggaagtgcagtaatgtatg-ca
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NC_019628_LCS ----------tttatgatc---acgataggtgccaagtggaagtgcagtaatgtatg-ta
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NC_020146_LCS ----------tttatgatt---acgataggtgccaggtggaagtgcagtaatgtatg-ca
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NC_015402_LCS ----------tttattata---acgataggtgccaagtggaagtgcagtaatgtatg-ta
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||||
NC_004766_LCS ----------tttctcact---acgataggtgctaagtggaagtgcagtaatgtatg-ca
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||||
NC_012052_LCS ----------tttgttatt---acgataggtgccaagtggaagtgcagtaatgtatg-ca
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||||
NC_001319_LCS ----------tttattttt---acgataggtgccaagtggaagtgcagtaatgtatg-ta
|
||||
NC_004543_LCS ----------tttatcata---acaataggtgccaagtagaagtgcagtaatgtatg-ca
|
||||
NC_020259_LCS ----------tttatcata---acaataggtgccaagtggaagtgcagtaatgtatg-ca
|
||||
NC_025659_LCS ----------tttctcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_026775_LCS ----------cttatcatt---acgataggtgccaagtggaagtgcagtgatgtatg-ca
|
||||
NC_026773_LCS ----------cttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_025305_LCS --------------ttatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_011954_LCS ----------tttatcatc---acgataggtgtcaagtggaagtgcagtgatgcatg-ca
|
||||
NC_026301_LCS ----------tttatcatc---acgataggtgtcaagtggagatgcagtaatgtatg-ca
|
||||
NC_010654_LCS ----------tttatcatc---acgataggtgtcaagtggagatgcagtgatgtatg-ca
|
||||
NC_026778_LCS ----------tttatcatt---acaataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_021936_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_026776_LCS ----------tttatcatt---atgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_014056_LCS ----------tttctcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_026449_LCS ----------tgtatcaac---attataggtgccgagtgtaagtgcggcgatgcatg-ca
|
||||
NC_024945_LCS ----------tttatcag----acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_026785_LCS ----------tttatcatt---acaataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_023805_LCS ----------tttacgact---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_024827_LCS ----------tttacgact---acgataggtgtcaagtggaagtgcagtgatgtatg-ta
|
||||
NC_020365_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagcgatgtatg-ca
|
||||
NC_010548_LCS ----------tttattag----acgataggtgtcaagtggaagtgcagtgatgcatg-ca
|
||||
NC_013086_LCS ----------tttatcata---acgataggtgccaggtggaagtgcagtcatgtacg-ca
|
||||
NC_006861_LCS ----------tttatcatc---acgataggtgccaagtggaaatacagtaatgtatg-ca
|
||||
NC_003386_LCS ----------tttattatc---acgataggtgccaagtggaagtgcagtaatgtacg-ca
|
||||
NC_016471_LCS ----------tttataatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_010359_LCS ----------tttatcatc---acgataggtgccaggtggaagtgcagtgatgtatg-ta
|
||||
NC_020372_LCS ----------tttatcatc---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_014582_LCS ----------tttatcatt---acaataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_024421_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagcgatgtatg-ca
|
||||
NC_018114_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_026847_LCS ----------tttatcatt---ccaataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_023120_LCS ----------tttacgact---acgataggtgtcaagtggaagtgcagtgatgtatg-ta
|
||||
NC_014874_LCS ----------tttattatt---atgataggtgtcaagtggaagtgcagtgatgcatg-ca
|
||||
NC_011942_LCS ----------tttatcatc---acgataggtgtcaagtggagatgcagtaatgtatg-ca
|
||||
NC_016065_LCS ----------gcgattag----acgataggtgtcaagtggaagtgcagtgatgcatg-ca
|
||||
NC_022136_LCS ----------tttctcatc---acgataggtgccaagtggaagtgcagtaatgtatg-ca
|
||||
NC_014063_LCS ----------tttttcatt--aacgataggtgtcaagtggaagtgcagtaatgtatg-ca
|
||||
NC_023121_LCS ----------ttag--------gtgataggtgtcaagtggaagtgcagtgatgcatg-ca
|
||||
NC_021110_LCS ----------tttatcag----acgataggtgttaagtgaaagtacagtgatgtatg-ca
|
||||
NC_016063_LCS ----------tttatcag----acgataggtgttaagtgaaagtgcagtgatgtatg-ca
|
||||
NC_025642_LCS ----------tttatcatt---acgataggtgtcaagtgtaagtgcagtgatgtatg-ca
|
||||
NC_026202_LCS ----------tttataatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_009266_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgcatg-ca
|
||||
NC_002202_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_025554_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgtagtgatgtatg-ca
|
||||
NC_021111_LCS ----------tttatcatt---acgataggtgtcaagtgtaagtgcagtgatgtatg-ca
|
||||
NC_023359_LCS ----------tttatcatt---acgataggtgtcaagtgtaagtgcagtgatgtatg-ca
|
||||
NC_010776_LCS ----------tttatcatt---acgataggtgtcaggtggaagtgcagtgatgtatg-ca
|
||||
NC_024635_LCS ----------tttatcatt---ataataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_025907_LCS ----------tttatcatt---ccaataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_008336_LCS ----------tttattatt---acgataggtgtcaagtggaagtgcagcgatgtatg-ca
|
||||
NC_022457_LCS ----------tttattatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_023259_LCS ----------tttattatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_025909_LCS ----------tttctaatt--aacgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_024038_LCS ----------tttctaatt--aacgataggtgtcaggtggaagtgcagtaatgtacg-ca
|
||||
NC_014057_LCS ----------tttttcatt--aacgataggtgtcaagtggaagtacagtaatgtatg-ca
|
||||
NC_002694_LCS ----------tttttcatt--aacgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_010433_LCS_CMP ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_001666_LCS_CMP ----------ttta----------aataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_013991_LCS_CMP ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_024168_LCS_CMP ----------tttt---ag---acaataggtgccaggtggaagcgcagtaatgtgtg-ca
|
||||
NC_023356_LCS_CMP ----------tttatcatt---atgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_013707_LCS_CMP ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_021372_LCS ----------ttt----------aaataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_007578_LCS ----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_008454_LCS gatcattacgtttatcatt---acgataggtgttaagtggaagtgcagtgatgtatg-ca
|
||||
NC_014569_LCS cggcccgtcctttagagcaaaacaaataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
NC_026448_LCS ----------ttgatagtgactatgataggtactaagtgtaaatgcagcgatgtatgtta
|
||||
|
||||
|
||||
NC_000932_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_001320_LCS gctgaggcatcctaac-gaacgaacgatttgaac-
|
||||
NC_004677_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_008115_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_006290_LCS gctgaggcatcctaacagaccgatagacttgaac-
|
||||
NC_007942_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_026134_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_011828_LCS gctgaggcatcctaacagaccgatagacttgaac-
|
||||
NC_009618_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_002693_LCS gctgagacatcctaacagaccgctagacttgaac-
|
||||
NC_005086_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_009259_LCS gctgaggcatcctaacagaccgttagacttgaac-
|
||||
NC_024021_LCS gccgaggcatactaaaagaccgaaagatttgaac-
|
||||
NC_008335_LCS gctgaggcatcctaacagaccga------------
|
||||
NC_026295_LCS gccgaggcatactaaaagaccgaaagatttgaac-
|
||||
NC_016708_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_008796_LCS gctgaggcatcctaacagaccaatagacttgaac-
|
||||
NC_010442_LCS gctgaggcatcctaacagaccgatagacttgaac-
|
||||
NC_021425_LCS gctgaggcatcctaacagaccgttagacttgaac-
|
||||
NC_007407_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_015891_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_016064_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_001631_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_005087_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_021449_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_023119_LCS gctgaggcatcctaacagaccgaaagatttgaac-
|
||||
NC_023090_LCS gcggaggcatcctaacagaccggtagacttgaac-
|
||||
NC_015621_LCS gctgaggcatcctaacagaccggtagact------
|
||||
NC_009271_LCS gctgaggcatcctaacagaccggtagacttgaa--
|
||||
NC_003119_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_007144_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_009766_LCS gctgaggcatcctaatagaccggtagacttgaac-
|
||||
NC_025744_LCS gctgaggcatcctaacagaccgatagacttgaac-
|
||||
NC_001568_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_009765_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_017006_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_008829_LCS gctgaggcatcctaacagaccgagaggtttgaac-
|
||||
NC_014676_LCS gctgaggcatcctaacagaccggcagacttgaac-
|
||||
NC_025236_LCS gctgaggcatcctaac-gaacgaacgatttgaac-
|
||||
NC_023533_LCS gctgaggcatcctaaccaa-cgaacgatttgaac-
|
||||
NC_014062_LCS gctgaggcatcctaat-gaacgaacgatttgaac-
|
||||
NC_020321_LCS gctgaggcatcctaacagaccgaaagattttaac-
|
||||
NC_012818_LCS gctgaggcatcctaacagaccgagaggtttgaac-
|
||||
NC_022137_LCS gctgaggcatcctaacagaccgagaggtttgaac-
|
||||
NC_014348_LCS gctgaggcatcctaacagaccgagaggtttgaac-
|
||||
NC_024158_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_014699_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_010109_LCS gctgagacatcctaacagaccgagagatttgaac-
|
||||
NC_014592_LCS gctgaggcatcctaacagaccgagaggtttgaac-
|
||||
NC_014675_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_024291_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_019628_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_020146_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_015402_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_004766_LCS gctgaggcatcctaacagaccgagaggtttgaac-
|
||||
NC_012052_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_001319_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_004543_LCS gctgaggcattctaacagaccgagagatttgaac-
|
||||
NC_020259_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_025659_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_026775_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_026773_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_025305_LCS gctgaggcatcctaacagaccgaaagatttgaac-
|
||||
NC_011954_LCS gctgagacatcctaacagaccgagagatttgaac-
|
||||
NC_026301_LCS gctgaggcatcctaaaagaccgagagatttgaac-
|
||||
NC_010654_LCS gctgaggcatcctaaaagaccgagagatttgaac-
|
||||
NC_026778_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_021936_LCS gctgaggcattctaacagaccgagagatttgaac-
|
||||
NC_026776_LCS gctgaggcatcctaatagaccgagagatttgaac-
|
||||
NC_014056_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_026449_LCS gctgaggcatactaaaagaccgatatattttaac-
|
||||
NC_024945_LCS gctgaggcatcctaacagactaaaagatttgaac-
|
||||
NC_026785_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_023805_LCS gctaaggcatcctaatagaccgaaagatttgaac-
|
||||
NC_024827_LCS gctaaggcatcctaacagaccgaaagatttgaac-
|
||||
NC_020365_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_010548_LCS gccgaggcatcctaagagaccggaagatttgaac-
|
||||
NC_013086_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_006861_LCS gctgaggcatcctaacagaccaagagatttgaacc
|
||||
NC_003386_LCS gctgaggcatcctaacagaccgatggctttgaacc
|
||||
NC_016471_LCS gctgaggcatcctaacagaccaagagatttgaac-
|
||||
NC_010359_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_020372_LCS gctgaggcatcctaacagaccgatagatttgaac-
|
||||
NC_014582_LCS gctgaggcatcctaacagaccagtagacttgaac-
|
||||
NC_024421_LCS gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_018114_LCS gctgaggcatcctaacagaccgagagatttgaacc
|
||||
NC_026847_LCS gctgaggcatcctaacagaccgcaagacttga---
|
||||
NC_023120_LCS gctaaggcatcctaacagaccgaaagatttgaac-
|
||||
NC_014874_LCS gctgaggcatactaacagaccgagagattttaacc
|
||||
NC_011942_LCS gctgaggcatcctaaaagaccgagagatttgaac-
|
||||
NC_016065_LCS gccgagacatcctaagagaccaaaagatttgaac-
|
||||
NC_022136_LCS gctgaggcatcctaacagaccggaagatttgaac-
|
||||
NC_014063_LCS gctgagtcatcctaacagaccgatagacttgaac-
|
||||
NC_023121_LCS gccgaggcatactaaaagaccgaaagatttgaac-
|
||||
NC_021110_LCS gccaaggcatcctaacagaccga-agatttgaacc
|
||||
NC_016063_LCS gccaaggcatcctaacagaccga-agatttgaacc
|
||||
NC_025642_LCS gctgagacatcctaacagaccggtagacttgaac-
|
||||
NC_026202_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_009266_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_002202_LCS gctgaggcatcctaacagacccacagacttgaac-
|
||||
NC_025554_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_021111_LCS gctgagacatcctaacagaccggtagacttgaac-
|
||||
NC_023359_LCS gctgaggcatcctaacagaccgatagacttgaac-
|
||||
NC_010776_LCS gctgaggcatcctaacagaccgatagacttgaac-
|
||||
NC_024635_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_025907_LCS gctgaggcatcctaacagaccacaagacttgaac-
|
||||
NC_008336_LCS gctgaggcatcctaacagaccgacagacttgaac-
|
||||
NC_022457_LCS gctgaggcatcctaacagaccgccagacttgaac-
|
||||
NC_023259_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_025909_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_024038_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_014057_LCS gctgaggcatcctaacagaccgatagacttgaac-
|
||||
NC_002694_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_010433_LCS_CMP gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_001666_LCS_CMP gctgaggcatcctaac-gaacgaacgatttgaac-
|
||||
NC_013991_LCS_CMP gctgaggcatcctaacagaccgagagatttgaac-
|
||||
NC_024168_LCS_CMP gccgaggcatcctaacagaccgagaggtttgaac-
|
||||
NC_023356_LCS_CMP gctgaggcatcctaacagaccgatagatttgaac-
|
||||
NC_013707_LCS_CMP gctgaggcatcctaacagaccggtagacttgaa--
|
||||
NC_021372_LCS gctgaggcatcctaacgaac-gaacgatttgaac-
|
||||
NC_007578_LCS gctgaggcatcctaacagaccggtagacttgaacc
|
||||
NC_008454_LCS gctgaggcatcctaacagaccgttagacttgaac-
|
||||
NC_014569_LCS gctgaggcatcctaacagaccggtagacttgaac-
|
||||
NC_026448_LCS gcttaggtatcctaaaagaccgatttatttgaac-
|
||||
|
||||
|
||||
496
data/rrna/4.5S.goodali.fst
Normal file
496
data/rrna/4.5S.goodali.fst
Normal file
@ -0,0 +1,496 @@
|
||||
>NC_000932_LCS count=162; cluster_center=True; seq_length=103; cluster=NC_000932_LCS; cluster_score=1.0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_001320_LCS count=84; cluster_center=False; seq_length=95; cluster=NC_000932_LCS; cluster_score=0.847619; cluster_weight=559;
|
||||
taaggtagcggcgagacgagccg-------------------------------------
|
||||
----------ttta----------aataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaac-gaacgaacgatttgaac-
|
||||
>NC_004677_LCS count=72; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.961538; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_008115_LCS count=39; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.990291; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagctg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_006290_LCS count=17; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.990291; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgatagacttgaac-
|
||||
>NC_007942_LCS count=10; cluster_center=False; seq_length=104; cluster=NC_000932_LCS; cluster_score=0.961538; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttctaatt--aatgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_026134_LCS count=6; cluster_center=False; seq_length=104; cluster=NC_000932_LCS; cluster_score=0.990385; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt--aacgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_011828_LCS count=6; cluster_center=False; seq_length=104; cluster=NC_000932_LCS; cluster_score=0.951923; cluster_weight=559;
|
||||
gaaggtcacggcgagactagccg-------------------------------------
|
||||
----------tttttcatt--aacgataggtgtcaagtggaagtgcagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccgatagacttgaac-
|
||||
>NC_009618_LCS count=5; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.942308; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatc---acgataggtgtcaagtggaagtgcagtgatgcatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_002693_LCS count=5; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.970874; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---atgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgagacatcctaacagaccgctagacttgaac-
|
||||
>NC_005086_LCS count=5; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.951923; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatc---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_009259_LCS count=4; cluster_center=False; seq_length=104; cluster=NC_000932_LCS; cluster_score=0.951923; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttctaatt--aatgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgttagacttgaac-
|
||||
>NC_024021_LCS count=4; cluster_center=False; seq_length=96; cluster=NC_000932_LCS; cluster_score=0.834951; Strand=1; cluster_weight=559;
|
||||
--aggtcatggcgagacgagccg-------------------------------------
|
||||
----------ttag--------gtgataggtgtcaagtggaagtgcagtgatgcatg-ca
|
||||
gccgaggcatactaaaagaccgaaagatttgaac-
|
||||
>NC_008335_LCS count=4; cluster_center=False; seq_length=91; cluster=NC_000932_LCS; cluster_score=0.883495; Strand=0; cluster_weight=559;
|
||||
-aaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccga------------
|
||||
>NC_026295_LCS count=4; cluster_center=False; seq_length=96; cluster=NC_000932_LCS; cluster_score=0.84466; Strand=1; cluster_weight=559;
|
||||
--aggtcacggcgagacgagccg-------------------------------------
|
||||
----------ttag--------gtgataggtgtcaagtggaagtgcagtgatgcatg-ca
|
||||
gccgaggcatactaaaagaccgaaagatttgaac-
|
||||
>NC_016708_LCS count=4; cluster_center=False; seq_length=104; cluster=NC_000932_LCS; cluster_score=0.980769; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttctcatt--aacgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_008796_LCS count=3; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.980583; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccaatagacttgaac-
|
||||
>NC_010442_LCS count=3; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.980583; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acaataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgatagacttgaac-
|
||||
>NC_021425_LCS count=3; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.990291; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgttagacttgaac-
|
||||
>NC_007407_LCS count=3; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.951923; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgccaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_015891_LCS count=3; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.951923; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_016064_LCS count=3; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.951923; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtacagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_001631_LCS count=3; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.942308; Strand=1; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttataatt---atgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_005087_LCS count=3; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.923077; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttatcatc---acgataggtgccaagtggaagtgcagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_021449_LCS count=3; cluster_center=False; seq_length=105; cluster=NC_000932_LCS; cluster_score=0.980952; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_023119_LCS count=2; cluster_center=False; seq_length=102; cluster=NC_000932_LCS; cluster_score=0.941748; Strand=0; cluster_weight=559;
|
||||
-aaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttttcatt---ccgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgaaagatttgaac-
|
||||
>NC_023090_LCS count=2; cluster_center=False; seq_length=104; cluster=NC_000932_LCS; cluster_score=0.971154; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttctcatt--aacgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gcggaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_015621_LCS count=2; cluster_center=False; seq_length=98; cluster=NC_000932_LCS; cluster_score=0.951456; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagact------
|
||||
>NC_009271_LCS count=2; cluster_center=False; seq_length=102; cluster=NC_000932_LCS; cluster_score=0.990291; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaa--
|
||||
>NC_003119_LCS count=2; cluster_center=False; seq_length=104; cluster=NC_000932_LCS; cluster_score=0.971154; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttttcatt--aacgataggtgtcaagtggaagtgcagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_007144_LCS count=2; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.980583; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagatgagccg-------------------------------------
|
||||
----------tttatcatc---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_009766_LCS count=2; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.990291; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaatagaccggtagacttgaac-
|
||||
>NC_025744_LCS count=2; cluster_center=False; seq_length=102; cluster=NC_000932_LCS; cluster_score=0.942308; Strand=1; cluster_weight=559;
|
||||
-aaggtcacggcgagactagccg-------------------------------------
|
||||
-----------ttttcatt--aacgataggtgtcaagtggaagtgcagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccgatagacttgaac-
|
||||
>NC_001568_LCS count=2; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.990291; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_009765_LCS count=2; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.990291; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acaataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_017006_LCS count=2; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.913462; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttatcacc---acgataggtgccaagtggaagtgcagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_008829_LCS count=2; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.913462; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttatcact---acgataggtgccaagtggaagtgcagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagaggtttgaac-
|
||||
>NC_014676_LCS count=2; cluster_center=False; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.990291; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggcagacttgaac-
|
||||
>NC_025236_LCS count=1; cluster_center=False; cut=117439..117533; seq_length=95; cluster=NC_000932_LCS; cluster_score=0.838095; Strand=0; cluster_weight=559;
|
||||
taaggtagcggcgagacgagccg-------------------------------------
|
||||
----------ttta----------aataggtgtcaagtggaagtacagtgatgtatg-ca
|
||||
gctgaggcatcctaac-gaacgaacgatttgaac-
|
||||
>NC_023533_LCS count=1; cluster_center=False; cut=117008..117102; seq_length=95; cluster=NC_000932_LCS; cluster_score=0.839623; Strand=0; cluster_weight=559;
|
||||
taaggtagcggcgagacgagccg-------------------------------------
|
||||
----------ttta----------aataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaaccaa-cgaacgatttgaac-
|
||||
>NC_014062_LCS count=1; cluster_center=False; cut=121161..121255; seq_length=95; cluster=NC_000932_LCS; cluster_score=0.838095; Strand=0; cluster_weight=559;
|
||||
taaggtagcggcgagacgagccg-------------------------------------
|
||||
----------ttta----------aataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaat-gaacgaacgatttgaac-
|
||||
>NC_020321_LCS count=1; cluster_center=False; cut=101414..101515; seq_length=102; cluster=NC_000932_LCS; cluster_score=0.893204; Strand=1; cluster_weight=559;
|
||||
taaggtcaaggcgagacgagcct-------------------------------------
|
||||
----------tttatcaa----acgataggtatcaagtggaagtgcagtgatgtacg-ca
|
||||
gctgaggcatcctaacagaccgaaagattttaac-
|
||||
>NC_012818_LCS count=1; cluster_center=False; cut=152550..152652; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.894231; Strand=1; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttatcacc---acgataggtgccaagtggaggtgcagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagaggtttgaac-
|
||||
>NC_022137_LCS count=1; cluster_center=False; cut=150383..150485; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.894231; Strand=1; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttatcacc---acgataggtgccaagtggaggtgcagtgatgcatg-ca
|
||||
gctgaggcatcctaacagaccgagaggtttgaac-
|
||||
>NC_014348_LCS count=1; cluster_center=False; cut=148751..148853; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.895238; Strand=1; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttatcact---acgataggtgctaagtggaggtgcagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagaggtttgaac-
|
||||
>NC_024158_LCS count=1; cluster_center=False; cut=138359..138461; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.913462; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttatcatc---acgataggtgccaggtggaagtgcagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_014699_LCS count=1; cluster_center=False; cut=125720..125822; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.923077; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgccaggtggaagtgcagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_010109_LCS count=1; cluster_center=False; cut=142992..143094; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.942308; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgagacatcctaacagaccgagagatttgaac-
|
||||
>NC_014592_LCS count=1; cluster_center=False; cut=152146..152248; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.866667; Strand=1; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttatcgcc---acaataggtgctaagtggaggtgcagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagaggtttgaac-
|
||||
>NC_014675_LCS count=1; cluster_center=False; cut=134461..134563; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.903846; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttatcgtc---acgataggtgccaagtggaagtgcagtaatgcatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_024291_LCS count=1; cluster_center=False; cut=119572..119674; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.913462; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttatgatc---acgataggtgccaagtggaagtgcagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_019628_LCS count=1; cluster_center=False; cut=113128..113230; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.903846; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttatgatc---acgataggtgccaagtggaagtgcagtaatgtatg-ta
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_020146_LCS count=1; cluster_center=False; cut=124175..124277; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.913462; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttatgatt---acgataggtgccaggtggaagtgcagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_015402_LCS count=1; cluster_center=False; cut=111547..111649; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.903846; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttattata---acgataggtgccaagtggaagtgcagtaatgtatg-ta
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_004766_LCS count=1; cluster_center=False; cut=146832..146934; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.895238; Strand=1; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttctcact---acgataggtgctaagtggaagtgcagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagaggtttgaac-
|
||||
>NC_012052_LCS count=1; cluster_center=False; cut=114432..114534; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.913462; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttgttatt---acgataggtgccaagtggaagtgcagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_001319_LCS count=1; cluster_center=False; cut=113188..113290; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.894231; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcaagactagccg-------------------------------------
|
||||
----------tttattttt---acgataggtgccaagtggaagtgcagtaatgtatg-ta
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_004543_LCS count=1; cluster_center=False; cut=147535..147637; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.884615; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcaagatgagccg-------------------------------------
|
||||
----------tttatcata---acaataggtgccaagtagaagtgcagtaatgtatg-ca
|
||||
gctgaggcattctaacagaccgagagatttgaac-
|
||||
>NC_020259_LCS count=1; cluster_center=False; cut=144766..144868; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.903846; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcaagatgagccg-------------------------------------
|
||||
----------tttatcata---acaataggtgccaagtggaagtgcagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_025659_LCS count=1; cluster_center=False; cut=124686..124788; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.942308; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcgagacgagcca-------------------------------------
|
||||
----------tttctcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_026775_LCS count=1; cluster_center=False; cut=130118..130220; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.942308; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------cttatcatt---acgataggtgccaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_026773_LCS count=1; cluster_center=False; cut=131757..131859; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.951923; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------cttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_025305_LCS count=1; cluster_center=False; cut=135472..135570; seq_length=99; cluster=NC_000932_LCS; cluster_score=0.92233; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
--------------ttatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgaaagatttgaac-
|
||||
>NC_011954_LCS count=1; cluster_center=False; cut=93045..93147; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.932692; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatc---acgataggtgtcaagtggaagtgcagtgatgcatg-ca
|
||||
gctgagacatcctaacagaccgagagatttgaac-
|
||||
>NC_026301_LCS count=1; cluster_center=False; cut=97098..97200; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.914286; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatc---acgataggtgtcaagtggagatgcagtaatgtatg-ca
|
||||
gctgaggcatcctaaaagaccgagagatttgaac-
|
||||
>NC_010654_LCS count=1; cluster_center=False; cut=101596..101698; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.92381; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatc---acgataggtgtcaagtggagatgcagtgatgtatg-ca
|
||||
gctgaggcatcctaaaagaccgagagatttgaac-
|
||||
>NC_026778_LCS count=1; cluster_center=False; cut=126845..126947; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.951923; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acaataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_021936_LCS count=1; cluster_center=False; cut=132851..132953; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.951923; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcattctaacagaccgagagatttgaac-
|
||||
>NC_026776_LCS count=1; cluster_center=False; cut=134622..134724; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.942308; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---atgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaatagaccgagagatttgaac-
|
||||
>NC_014056_LCS count=1; cluster_center=False; cut=122521..122623; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.951923; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttctcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_026449_LCS count=1; cluster_center=False; cut=19564..19668; seq_length=105; cluster=NC_000932_LCS; cluster_score=0.813084; Strand=0; cluster_weight=559;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tgtatcaac---attataggtgccgagtgtaagtgcggcgatgcatg-ca
|
||||
gctgaggcatactaaaagaccgatatattttaac-
|
||||
>NC_024945_LCS count=1; cluster_center=False; cut=109064..109165; seq_length=102; cluster=NC_000932_LCS; cluster_score=0.896226; Strand=1; cluster_weight=559;
|
||||
taaggtcacggcgagatgagccg-------------------------------------
|
||||
----------tttatcag----acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagactaaaagatttgaac-
|
||||
>NC_026785_LCS count=1; cluster_center=False; cut=132320..132422; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.942308; Strand=0; cluster_weight=559;
|
||||
taaggtcacggctagacgagccg-------------------------------------
|
||||
----------tttatcatt---acaataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_023805_LCS count=1; cluster_center=False; cut=98463..98565; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.894231; Strand=0; cluster_weight=559;
|
||||
taaggtcacggtgagactagccg-------------------------------------
|
||||
----------tttacgact---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctaaggcatcctaatagaccgaaagatttgaac-
|
||||
>NC_024827_LCS count=1; cluster_center=False; cut=111970..112072; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.894231; Strand=1; cluster_weight=559;
|
||||
taaggtcacggtgagactagccg-------------------------------------
|
||||
----------tttacgact---acgataggtgtcaagtggaagtgcagtgatgtatg-ta
|
||||
gctaaggcatcctaacagaccgaaagatttgaac-
|
||||
>NC_020365_LCS count=1; cluster_center=False; cut=133176..133278; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.942308; Strand=0; cluster_weight=559;
|
||||
taaggtcacgtcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagcgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_010548_LCS count=1; cluster_center=False; cut=100631..100732; seq_length=102; cluster=NC_000932_LCS; cluster_score=0.902913; Strand=0; cluster_weight=559;
|
||||
taaggtcatggcgagacgagccg-------------------------------------
|
||||
----------tttattag----acgataggtgtcaagtggaagtgcagtgatgcatg-ca
|
||||
gccgaggcatcctaagagaccggaagatttgaac-
|
||||
>NC_013086_LCS count=1; cluster_center=False; cut=137008..137110; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.885714; Strand=0; cluster_weight=559;
|
||||
tgaggtcacggcaagatgagccg-------------------------------------
|
||||
----------tttatcata---acgataggtgccaggtggaagtgcagtcatgtacg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_006861_LCS count=1; cluster_center=False; cut=143527..143629; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.885714; Strand=0; cluster_weight=559;
|
||||
-aaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttatcatc---acgataggtgccaagtggaaatacagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccaagagatttgaacc
|
||||
>NC_003386_LCS count=1; cluster_center=False; cut=125420..125522; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.885714; Strand=0; cluster_weight=559;
|
||||
-aaggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttattatc---acgataggtgccaagtggaagtgcagtaatgtacg-ca
|
||||
gctgaggcatcctaacagaccgatggctttgaacc
|
||||
>NC_016471_LCS count=1; cluster_center=False; cut=70088..70189; seq_length=102; cluster=NC_000932_LCS; cluster_score=0.942308; Strand=0; cluster_weight=559;
|
||||
-aaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttataatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccaagagatttgaac-
|
||||
>NC_010359_LCS count=1; cluster_center=False; cut=100778..100879; seq_length=102; cluster=NC_000932_LCS; cluster_score=0.923077; Strand=0; cluster_weight=559;
|
||||
-aaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatc---acgataggtgccaggtggaagtgcagtgatgtatg-ta
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_020372_LCS count=1; cluster_center=False; cut=142338..142439; seq_length=102; cluster=NC_000932_LCS; cluster_score=0.961165; Strand=0; cluster_weight=559;
|
||||
-aaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatc---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgatagatttgaac-
|
||||
>NC_014582_LCS count=1; cluster_center=False; cut=127077..127178; seq_length=102; cluster=NC_000932_LCS; cluster_score=0.970874; Strand=0; cluster_weight=559;
|
||||
-aaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acaataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccagtagacttgaac-
|
||||
>NC_024421_LCS count=1; cluster_center=False; cut=132893..132994; seq_length=102; cluster=NC_000932_LCS; cluster_score=0.951923; Strand=0; cluster_weight=559;
|
||||
-aaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagcgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac-
|
||||
>NC_018114_LCS count=1; cluster_center=False; cut=120740..120842; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.952381; Strand=0; cluster_weight=559;
|
||||
-aaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaacc
|
||||
>NC_026847_LCS count=1; cluster_center=False; cut=142523..142622; seq_length=100; cluster=NC_000932_LCS; cluster_score=0.932039; Strand=0; cluster_weight=559;
|
||||
-aaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---ccaataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgcaagacttga---
|
||||
>NC_023120_LCS count=1; cluster_center=False; cut=107871..107972; seq_length=102; cluster=NC_000932_LCS; cluster_score=0.894231; Strand=0; cluster_weight=559;
|
||||
-aaggtcacggtgagactagccg-------------------------------------
|
||||
----------tttacgact---acgataggtgtcaagtggaagtgcagtgatgtatg-ta
|
||||
gctaaggcatcctaacagaccgaaagatttgaac-
|
||||
>NC_014874_LCS count=1; cluster_center=False; cut=41650..41752; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.885714; Strand=0; cluster_weight=559;
|
||||
-aaggtcacggttagacgagccg-------------------------------------
|
||||
----------tttattatt---atgataggtgtcaagtggaagtgcagtgatgcatg-ca
|
||||
gctgaggcatactaacagaccgagagattttaacc
|
||||
>NC_011942_LCS count=1; cluster_center=False; cut=39883..39972; seq_length=90; cluster=NC_000932_LCS; cluster_score=0.8; Strand=0; cluster_weight=559;
|
||||
-------------agacgagccg-------------------------------------
|
||||
----------tttatcatc---acgataggtgtcaagtggagatgcagtaatgtatg-ca
|
||||
gctgaggcatcctaaaagaccgagagatttgaac-
|
||||
>NC_016065_LCS count=1; cluster_center=False; cut=58742..58843; seq_length=102; cluster=NC_000932_LCS; cluster_score=0.803738; Strand=0; cluster_weight=559;
|
||||
agaggtcttggcgagactagcca-------------------------------------
|
||||
----------gcgattag----acgataggtgtcaagtggaagtgcagtgatgcatg-ca
|
||||
gccgagacatcctaagagaccaaaagatttgaac-
|
||||
>NC_022136_LCS count=1; cluster_center=False; cut=152638..152740; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.932039; Strand=1; cluster_weight=559;
|
||||
caaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttctcatc---acgataggtgccaagtggaagtgcagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccggaagatttgaac-
|
||||
>NC_014063_LCS count=1; cluster_center=False; cut=89893..89996; seq_length=104; cluster=NC_000932_LCS; cluster_score=0.942308; Strand=0; cluster_weight=559;
|
||||
caaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttttcatt--aacgataggtgtcaagtggaagtgcagtaatgtatg-ca
|
||||
gctgagtcatcctaacagaccgatagacttgaac-
|
||||
>NC_023121_LCS count=1; cluster_center=False; cut=57558..57654; seq_length=97; cluster=NC_000932_LCS; cluster_score=0.84466; Strand=0; cluster_weight=559;
|
||||
-caggtcacggcgagacgagccg-------------------------------------
|
||||
----------ttag--------gtgataggtgtcaagtggaagtgcagtgatgcatg-ca
|
||||
gccgaggcatactaaaagaccgaaagatttgaac-
|
||||
>NC_021110_LCS count=1; cluster_center=False; cut=105447..105548; seq_length=102; cluster=NC_000932_LCS; cluster_score=0.87619; Strand=0; cluster_weight=559;
|
||||
cgaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcag----acgataggtgttaagtgaaagtacagtgatgtatg-ca
|
||||
gccaaggcatcctaacagaccga-agatttgaacc
|
||||
>NC_016063_LCS count=1; cluster_center=False; cut=106726..106827; seq_length=102; cluster=NC_000932_LCS; cluster_score=0.885714; Strand=0; cluster_weight=559;
|
||||
cgaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcag----acgataggtgttaagtgaaagtgcagtgatgtatg-ca
|
||||
gccaaggcatcctaacagaccga-agatttgaacc
|
||||
>NC_025642_LCS count=1; cluster_center=False; cut=69137..69239; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.970874; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagcca-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtgtaagtgcagtgatgtatg-ca
|
||||
gctgagacatcctaacagaccggtagacttgaac-
|
||||
>NC_026202_LCS count=1; cluster_center=False; cut=129378..129480; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.990291; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttataatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_009266_LCS count=1; cluster_center=False; cut=130502..130604; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.990291; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgcatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_002202_LCS count=1; cluster_center=False; cut=128763..128865; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.970874; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagacccacagacttgaac-
|
||||
>NC_025554_LCS count=1; cluster_center=False; cut=135213..135315; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.990291; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgtagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_021111_LCS count=1; cluster_center=False; cut=32758..32860; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.980583; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtgtaagtgcagtgatgtatg-ca
|
||||
gctgagacatcctaacagaccggtagacttgaac-
|
||||
>NC_023359_LCS count=1; cluster_center=False; cut=127655..127757; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.980583; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtgtaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgatagacttgaac-
|
||||
>NC_010776_LCS count=1; cluster_center=False; cut=136579..136681; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.980583; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaggtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgatagacttgaac-
|
||||
>NC_024635_LCS count=1; cluster_center=False; cut=108314..108416; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.980583; Strand=1; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---ataataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_025907_LCS count=1; cluster_center=False; cut=127320..127422; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.951456; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---ccaataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccacaagacttgaac-
|
||||
>NC_008336_LCS count=1; cluster_center=False; cut=133098..133200; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.961165; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttattatt---acgataggtgtcaagtggaagtgcagcgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgacagacttgaac-
|
||||
>NC_022457_LCS count=1; cluster_center=False; cut=131133..131235; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.970874; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttattatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgccagacttgaac-
|
||||
>NC_023259_LCS count=1; cluster_center=False; cut=137002..137104; seq_length=103; cluster=NC_000932_LCS; cluster_score=0.990291; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttattatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_025909_LCS count=1; cluster_center=False; cut=127251..127354; seq_length=104; cluster=NC_000932_LCS; cluster_score=0.971154; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttctaatt--aacgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_024038_LCS count=1; cluster_center=False; cut=106484..106587; seq_length=104; cluster=NC_000932_LCS; cluster_score=0.942308; Strand=1; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttctaatt--aacgataggtgtcaggtggaagtgcagtaatgtacg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_014057_LCS count=1; cluster_center=False; cut=42962..43065; seq_length=104; cluster=NC_000932_LCS; cluster_score=0.951923; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttttcatt--aacgataggtgtcaagtggaagtacagtaatgtatg-ca
|
||||
gctgaggcatcctaacagaccgatagacttgaac-
|
||||
>NC_002694_LCS count=1; cluster_center=False; cut=127517..127620; seq_length=104; cluster=NC_000932_LCS; cluster_score=0.980769; Strand=0; cluster_weight=559;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttttcatt--aacgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac-
|
||||
>NC_010433_LCS_CMP complemented=True; count=19; cluster_center=True; seq_length=103; cluster=NC_010433_LCS; cluster_score=1.0; cluster_weight=28;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac
|
||||
>NC_001666_LCS_CMP complemented=True; count=4; cluster_center=False; seq_length=95; cluster=NC_010433_LCS; cluster_score=0.847619; cluster_weight=28;
|
||||
taaggtagcggcgagacgagccg-------------------------------------
|
||||
----------ttta----------aataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaac-gaacgaacgatttgaac
|
||||
>NC_013991_LCS_CMP complemented=True; count=2; cluster_center=False; seq_length=103; cluster=NC_010433_LCS; cluster_score=0.961538; cluster_weight=28;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgagagatttgaac
|
||||
>NC_024168_LCS_CMP complemented=True; count=1; cluster_center=False; cut=129161..129258; seq_length=98; cluster=NC_010433_LCS; cluster_score=0.826923; Strand=1; cluster_weight=28;
|
||||
--aggtcacggcaagacgagccg-------------------------------------
|
||||
----------tttt---ag---acaataggtgccaggtggaagcgcagtaatgtgtg-ca
|
||||
gccgaggcatcctaacagaccgagaggtttgaac
|
||||
>NC_023356_LCS_CMP complemented=True; count=1; cluster_center=False; cut=79931..80033; seq_length=103; cluster=NC_010433_LCS; cluster_score=0.961165; Strand=0; cluster_weight=28;
|
||||
taaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---atgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgatagatttgaac
|
||||
>NC_013707_LCS_CMP complemented=True; count=1; cluster_center=False; cut=132910..133011; seq_length=102; cluster=NC_010433_LCS; cluster_score=0.990291; Strand=1; cluster_weight=28;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaa-
|
||||
>NC_021372_LCS count=3; cluster_center=True; seq_length=104; cluster=NC_021372_LCS; cluster_score=1.0; Strand=0; cluster_weight=3;
|
||||
taaggtagcggcgagacgagccg-------------------------------------
|
||||
----------ttt----------aaataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacgaac-gaacgatttgaac
|
||||
>NC_007578_LCS count=1; cluster_center=True; cut=129597..129859; seq_length=263; cluster=NC_007578_LCS; cluster_score=1.0; Strand=0; cluster_weight=1;
|
||||
gaaggtcacggcgagacgagccg-------------------------------------
|
||||
----------tttatcatt---acgataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaacc
|
||||
>NC_008454_LCS count=1; cluster_center=True; cut=197495..197626; seq_length=132; cluster=NC_008454_LCS; cluster_score=1.0; Strand=1; cluster_weight=1;
|
||||
gaaggtcacggcgagacgagccg------------------tttatcatattactcaatt
|
||||
gatcattacgtttatcatt---acgataggtgttaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccgttagacttgaac
|
||||
>NC_014569_LCS count=1; cluster_center=True; cut=102326..102478; seq_length=153; cluster=NC_014569_LCS; cluster_score=1.0; Strand=0; cluster_weight=1;
|
||||
gaaggtcacggcgagacgagccgtttgttttagagtgtcaaagtcttgagaattcaggcg
|
||||
cggcccgtcctttagagcaaaacaaataggtgtcaagtggaagtgcagtgatgtatg-ca
|
||||
gctgaggcatcctaacagaccggtagacttgaac
|
||||
>NC_026448_LCS count=1; cluster_center=True; cut=12936..13042; seq_length=107; cluster=NC_026448_LCS; cluster_score=1.0; Strand=0; cluster_weight=1;
|
||||
taaggtcgcggcgagatgatccg-------------------------------------
|
||||
----------ttgatagtgactatgataggtactaagtgtaaatgcagcgatgtatgtta
|
||||
gcttaggtatcctaaaagaccgatttatttgaac
|
||||
BIN
data/trna/ncbi20150303.adx
Normal file
BIN
data/trna/ncbi20150303.adx
Normal file
Binary file not shown.
1
data/trna/ncbi20150303.ndx.REMOVED.git-id
Normal file
1
data/trna/ncbi20150303.ndx.REMOVED.git-id
Normal file
@ -0,0 +1 @@
|
||||
0b9d49e3330cd8e6abe0c8b010e9931f7b2f22f3
|
||||
BIN
data/trna/ncbi20150303.rdx
Normal file
BIN
data/trna/ncbi20150303.rdx
Normal file
Binary file not shown.
1
data/trna/ncbi20150303.tdx.REMOVED.git-id
Normal file
1
data/trna/ncbi20150303.tdx.REMOVED.git-id
Normal file
@ -0,0 +1 @@
|
||||
87cabbb1913329a9e693acad81654beb01f0e9bc
|
||||
1263
data/trna/trnaCAU.ref.fasta
Normal file
1263
data/trna/trnaCAU.ref.fasta
Normal file
File diff suppressed because it is too large
Load Diff
Reference in New Issue
Block a user