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added cds/tools/compare

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Former-commit-id: 07fb256bf17db3f0ffc1730b0383f8255fbb9129
Former-commit-id: fd6a1fe72a39c5633c2f9fb6de09af979c2a48f3
This commit is contained in:
alain viari
2015-11-09 01:15:14 +01:00
parent c3c2be254f
commit d77a0dfe67
16 changed files with 12503 additions and 16 deletions
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29
detectors/cds/tools/compare/lib/gbk.oneliner.awk Normal file
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@ -0,0 +1,29 @@
#
# genbank oneLiner
#
/^ [^ ]/ {
line = line "" substr($0, 12)
next
}
/^ [^\/]/ {
line = line "" substr($0, 21)
next
}
/^ ORGANISM/ {
if (line != "") print line
line = $0 ";"
next
}
{
if (line != "") print line
line = $0
next
}
END {
print line
}