PhyloSkims/annotate
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

cds/tools/chlorodb added

Browse Source 
Former-commit-id: 0579e878a69b7c285ca71870e9ca5730649a2fda
Former-commit-id: 7cced5b488441d87bf070a9a444317db0e048880
This commit is contained in:
alain viari
2015-11-13 17:41:18 +01:00
parent 0d5f0c1f20
commit e4d6a8484d
585 changed files with 4750 additions and 50 deletions
Download Patch File Download Diff File Expand all files Collapse all files

19
detectors/cds/tools/lib/cds2fasta.awk Normal file
View File

@ -0,0 +1,19 @@
#
# get fasta sequence from cds list
#
# [-v FIELD=13] CDS sequence
# [-v FIELD=14] Prot Sequence
#
BEGIN {
if (CHARPERLINE == "") CHARPERLINE = 50
if (FIELD == "") FIELD = 14
}
/^#/ { next }
{
name = $1 "@" $2 "@" $3 "@" $5 "@" $6 "@" $7 "@" $8 "@" int($9/3)
comment = $NF
PrintFasta($FIELD, name " " comment)
}