16 Commits

Author SHA1 Message Date
3589bf03eb Update Swissprot database 2025-05-22 02:23:26 +02:00
2c012eec8e first batch
Former-commit-id: 1eecb206a17c4aff21d1170b48db134ce3c4f14e
2025-03-01 16:15:28 +01:00
831669433e Switch to a swissprot based reference database for CDS annotation
Former-commit-id: 3da31ce8a135394ecac041291134d61f11f06d8f
Former-commit-id: 406f41a7cb2db14ea832480b86f72a11d3b0ab4a
2022-02-16 22:50:17 +01:00
616fd2bb44 A script for helping in clustering reference database for CDS annotation
Former-commit-id: 7babc60d47f433efd1301fbbe2a5714bfe7f7658
Former-commit-id: cf45c79769c6204598dd456573846496e4e834c0
2022-02-14 15:10:47 +01:00
59fcad1c42 Adds detection of RPS12 and managment of locus tags
Former-commit-id: b9b17708eaaa27580f1e99bd3c375d4b6aba4d79
Former-commit-id: 369361ffa58e65b19ab1005bdf7960924f24ca08
2022-02-14 14:21:50 +01:00
40feaadd43 Move the script used for clusterizing protein DBs
Former-commit-id: c27edd09d88f05618e33ac55deb6af0a9f69329c
Former-commit-id: 933bb60387f3903f4a5ffd8ff3ad20b16aff23bb
2021-06-01 09:53:10 +02:00
b7282fb30d minor addition in cds/compare
Former-commit-id: e865ea931fb2fc76f49b72d823eda712138647e3
Former-commit-id: 3d8d2bd249907fa4fbb7fae2ee06cf6090f62d5e
2015-11-15 13:13:36 +01:00
2d404b5b24 removed need of R igraph from chlorodb/subdb
Former-commit-id: 574aace9be5804d728a877110f5f475d61644f75
Former-commit-id: 2e7ea63447643830a62f18a364327d7b396ec140
2015-11-14 22:13:55 +01:00
d83201fd2f minor bug in chlorodb
Former-commit-id: 7017655ac86e7b7837c7b581bf8a1abb86c08b30
Former-commit-id: dcedd4e32e3c7ce302eed94abd2b975a4506df97
2015-11-14 15:16:16 +01:00
42707c281c added test for chlorodb
Former-commit-id: 639cbbdc91a6c7f11544dbbe1fa0c47e1e28eaad
Former-commit-id: 59f6ff3f727d01f3ed4d553a554b322b24119b06
2015-11-13 18:53:47 +01:00
13b03062d5 add doc for chlorodb
Former-commit-id: 55fd288275b46bd02170029b9bc683ad34c3c611
Former-commit-id: 329bedc41c4355741a5bbd3f2056ac1025f3da7f
2015-11-13 17:55:24 +01:00
e4d6a8484d cds/tools/chlorodb added
Former-commit-id: 0579e878a69b7c285ca71870e9ca5730649a2fda
Former-commit-id: 7cced5b488441d87bf070a9a444317db0e048880
2015-11-13 17:41:18 +01:00
0d5f0c1f20 summary added in comparison
Former-commit-id: 9a267727234dc9026ce3a54f543e62d8f609945a
Former-commit-id: 556a34a214aea8824f34d4a2c117f09527d88146
2015-11-11 18:51:15 +01:00
9108ce75f1 fixed too many partial CDS bug
Former-commit-id: d733a46f4e92f755f38e452f03a28062de6739f1
Former-commit-id: 36bdc324d2b9a0491d07d40a7e68a4cf7ea73984
2015-11-10 22:15:01 +01:00
262995a486 added cds/tools compare and chrlorodb
Former-commit-id: 31633e6bc503eb08ddb507e58e3ab1a6d2ba6027
Former-commit-id: 830c771b5453f3482f283ee069234a34127bf08f
2015-11-10 09:29:05 +01:00
d77a0dfe67 added cds/tools/compare
Former-commit-id: 07fb256bf17db3f0ffc1730b0383f8255fbb9129
Former-commit-id: fd6a1fe72a39c5633c2f9fb6de09af979c2a48f3
2015-11-09 01:15:14 +01:00