Commit Graph

168 Commits

Author SHA1 Message Date
01c5880ace First version including the rRNA detector
Former-commit-id: 865e2626c7cd92ea596aedefe2b760b3eaaa9c77
Former-commit-id: 94a2e642328eb679660c6ac5a6cb6803c2083632
2015-10-12 07:15:08 -03:00
bff0beaeee Add the reformating of the sequence in EMBL format
Former-commit-id: f58f9d6702775280555d8d05fa167594e33620b2
Former-commit-id: 99eb5825fe75585ac86805ffdcca65f4ee7c0070
2015-10-11 11:58:43 -03:00
c32f7cdde6 First version of the tRNA detector and of the global organnot.sh script
Former-commit-id: f2a75cf99b24875c90c426c2afb22a75b972bf60
Former-commit-id: 65e3dfb35df06ca69bb29b690c9a40e8940ac6bf
2015-10-11 10:39:59 -03:00
6015339839 First version of the scripts for building the CAU tRNA database
Former-commit-id: 443a0446133850bb57211c27d2001241b03472bd
Former-commit-id: 8af464a0786f81dddf795f0cbda9ada9974808bf
2015-10-10 19:12:02 -03:00
c402923d0f First version of if inverted repeat annotation tools
Former-commit-id: 9d13deae459b086f11ba4f0f82aac899b4ff0fd9
Former-commit-id: 74a7f07d3fb26f6ce12808b8fe2dc7f176181285
2015-10-08 17:38:01 -03:00
f901b87ccd rename the main normalization script in go_normalize.sh
Former-commit-id: e9488f88279a644134c24205c8b0a25459f55403
Former-commit-id: 1e661d834bb83a09777ab5a19dad21f2c795baa2
2015-10-08 15:44:08 -03:00
9973d1cf71 A first functionnal version of the normalize_plastid.sh script.
Former-commit-id: 78c4a4d8497e6dc7185a6e5726ffc643d9ea914d
Former-commit-id: e6945818dbdbabd9cd060edb9d2578ea26671209
2015-10-08 15:38:46 -03:00
b75035064c Patch building of the Single copy reference DB to make a single blast
database for Large and Small Single copy


Former-commit-id: 9bad3443085b2b6b066c7f33f3eaf2e49b5e8992
Former-commit-id: 15ce54a189d9def4b824c149f0ba5ba036794567
2015-10-07 12:29:48 -03:00
cbc32a6326 Add reference databases for LSC and SSC
Former-commit-id: 0feda4b763d819be5e766c713a86521ed7f652d3
Former-commit-id: f572455b22da41b6b15e3e21a2aac5dd1c2360ce
2015-10-07 11:36:20 -03:00
37e1ecc9fd Add scripts to generate reference DBs for LSC and SSC
Former-commit-id: 77fd69c9687bfc7cfd3305299c7c81d2a9eddada
Former-commit-id: 4d09933673c30d6a9b2b9cc985b33ef23d7a99f4
2015-10-07 11:32:17 -03:00
fb1158bcd4 Add a forgeted Makefile
Former-commit-id: f633e09b64ca5f887b350cd06fcbadd34cd2caa8
Former-commit-id: 6addadf3247686c43b130e1202a949afca74be8b
2015-10-06 19:14:53 -03:00
4e688d0a89 add gitignore files
Former-commit-id: 955ee956322e30388eac7e5322113e0783513e45
Former-commit-id: 212c98038aeb0c99043ef70048bf205766b75610
2015-10-05 23:28:09 -03:00
6f0ba35953 Patch compilation of binaries
Former-commit-id: 688670c339643a282bdeabafafff3b451be83cb6
Former-commit-id: 60d3e42d2af73515fea50d9c97dc4eacda9c8abb
2015-10-05 22:25:17 -03:00
c89d3cc24f Patch guess_port to take into account x64 darwin platform
Former-commit-id: ce57c25d880a4cadab0d8bda3db6ce329973e798
Former-commit-id: 2850583304560c8859cf2b0b16dfb363dc9f3e1a
2015-10-02 21:44:13 +02:00
d298385685 First commit - second part
Former-commit-id: 202296404e6a70f8ae96db99faffb456104c57e9
Former-commit-id: 118417735d2055683607df9809c9b721cc1b1bab
2015-10-02 21:13:16 +02:00
f44f0d8179 New directory structure
Former-commit-id: a4ad0a5ff84b3cb4d1f7bf3df344332ed499d1c6
Former-commit-id: d387b5f3490847c994377ba2fdf7d2125c715578
2015-09-17 16:55:01 +02:00
d4ba831499 add the find cds script
Former-commit-id: d4d49b96f84c942a1f15d10c286988f7cea3b76f
Former-commit-id: 541a8dc171fa695a307b76df0446b33a7112bad1
2015-05-07 16:42:15 +02:00
7eb55b5d0b Initial commit of ORG.Annotate
Former-commit-id: 8c4c1d0391ad06ed67e748e0f837399e9b3de7ad
Former-commit-id: 5af9ed909a6f6bed7bae86c77bd770ae4b5fc14e
2015-05-07 16:41:43 +02:00