4b71fe8c4c
modified: .gitignore new file: data/cds/sp_chlorodb/parameters.sh deleted: data/ir/LSC_RefDB.fasta deleted: data/ir/SSC_RefDB.fasta modified: detectors/cds/bin/go_cds.sh modified: detectors/normalize/lib/lookforIR.lib.sh modified: detectors/normalize/lib/selectIR.py modified: organnot/Dockerfile new file: organnot/README.md new file: organnot/dorgannot deleted: ports/.DS_Store deleted: src/ncbiblast/binaries/.gitignore deleted: src/prokov/lxpack/tests/S.fasta deleted: src/prokov/lxpack/tests/St.fasta deleted: src/prokov/lxpack/tests/Stt.fasta deleted: src/prokov/lxpack/tests/aS.fasta deleted: src/prokov/lxpack/tests/aSt.fasta deleted: src/prokov/lxpack/tests/aStt.fasta deleted: src/prokov/lxpack/tests/aaS.fasta deleted: src/prokov/lxpack/tests/aaSt.fasta deleted: src/prokov/lxpack/tests/aaStt.fasta new file: src/repseek/repseek-2014.09.tgz
29 lines
713 B
Bash
29 lines
713 B
Bash
# sourced file
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set CORE_NCDS_CUTOFF = 200
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set CORE_START_ATG_CUTOFF = 50
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set CORE_START_DFT_CUTOFF = 50
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set CORE_START_OTH_CUTOFF = 10
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set CORE_STOP_CUTOFF = 200
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set CORE_SPLICE_CUTOFF = 50
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set SHEL_NCDS_CUTOFF = 10
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set CORE_DELTA = Inf
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set CORE_COVMIN = 30
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set CORE_PMAX = 1e-6
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set CORE_IDMIN = 30
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set CORE_SIZMIN = 50
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set SHEL_DELTA = 0.5
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set SHEL_COVMIN = 30
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set SHEL_PMAX = 1e-6
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set SHEL_IDMIN = 30
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set SHEL_SIZMIN = 10
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set DUST_DELTA = 0.5
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set DUST_COVMIN = 30
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set DUST_PMAX = 1e-6
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set DUST_IDMIN = 30
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set DUST_SIZMIN = 10
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