Eric Coissac
831669433e
Former-commit-id: 3da31ce8a135394ecac041291134d61f11f06d8f Former-commit-id: 406f41a7cb2db14ea832480b86f72a11d3b0ab4a
23 lines
695 B
Bash
Executable File
23 lines
695 B
Bash
Executable File
#!/bin/bash
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# -- CAUTION -- Works as long than the script
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# is not called through a symlink
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THIS_DIR="$(dirname ${BASH_SOURCE[0]})"
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source "${THIS_DIR}/../../../scripts/bash_init.sh"
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( \
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for f in $* ; do \
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if [[ "$f" =~ \.gz$ ]] ; then \
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GREP=zgrep; \
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else \
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GREP=grep; \
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fi; \
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${GREP} -H -A 1 ' ORGANISM' $f; \
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done \
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) | \
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grep -B 1 Viridiplantae | \
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$AwkCmd '{print $1}' | \
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grep '\.gbk' | \
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sed -E 's/(^.*\.gbk(.gz)?).$/\1/' | \
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uniq |