Eric Coissac
81657a288a
Former-commit-id: f816e3ce8b10e2ca3f1aa9ae969c24e699368e25 Former-commit-id: 16fb412552debdfd2172926e8a8b63be05257bdf
18 lines
505 B
Bash
Executable File
18 lines
505 B
Bash
Executable File
#!/bin/bash
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( \
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for f in $* ; do \
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if [[ "$f" =~ \.gz$ ]] ; then \
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GREP=zgrep; \
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else \
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GREP=grep; \
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fi; \
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${GREP} -H -A 1 ' ORGANISM' $f; \
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done \
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) | \
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grep -B 1 Viridiplantae | \
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gawk '{print $1}' | \
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grep '\.gbk' | \
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sed -E 's/(^.*\.gbk(.gz)?).$/\1/' | \
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uniq |