#
# Make chloro DB's for use by CDS prediction program
#
mkdir myDB
mkdir myDB/download
cp GBKorEMBLEntries myDB/download
[optional
cp ORG_HOME/data/cds/chlorodb/parameters.sh myDB
<edit> myDB/parameters.sh
]
go_chlorodb.sh myDB
and... wait... (typical time : 5h for 500 Entries)
then (after checking)
mv ORG_HOME/data/cds/chlorodb ORG_HOME/data/cds/chlorodb.old
mv myDB ORG_HOME/data/cds/chlorodb
#
# notes
#
this requires an installed R > 3.0.1
with the following packages
igraph # <- mandatory
grid # <- the following are not needed
gridExtra # by scripts, but just to
vcd # produce graphics for models
plotrix # by lib/plot.models.r
you can check and install them by running :
lib/install.rpackages.r
d83201fd2f