git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@62 60f365c0-8329-0410-b2a4-ec073aeeaa1d

src/ecogrep.c

@@ -125,11 +125,11 @@ int main(int argc, char **argv){
 	ecotaxonomy_t	*taxonomy;						// stores the taxonomy
 		
 	char			*database			= NULL;		// stores the database path (for taxonomy)
+	char 			**pattern			= NULL;		// stores the regex pattern
+	char 			*line[19]			= {0};		// stores the line 	
 	int32_t		  	*restricted_taxid 	= NULL;		// stores the restricted taxid
 	int32_t       	*ignored_taxid		= NULL;		// stores the ignored taxid
-	char 			**pattern			= NULL;		// stores the regex pattern
-	char 			*line[19]			= {0};		// stores the line 
-	int				current_taxid;
+	int32_t			current_taxid;
 	
 	FILE			*file				= NULL;		// stores the data stream, stdin by default
 	char			*stream				= ECOMALLOC(sizeof(char *)*10000,"error stream buffer allocation");